Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10266g00002 ATGTCGACGCACACAATTGATGTGGATGAAGTGAATGAGTATAATGACAATGTTGATGACCGTAATGAAAGTTTAATGGAAATGGACCCAACAGTGCATATGTGTTTTGAATCAATGATTAAAGCTAAAAAATTTTACACAAACTACGCCATTAGAAGTGGGTTTACCGTGCGGACTAGAACTTCTAAAAAAGATAAAGACAACAACGTGTACTACTTGAGAATAGTTTGTTTAAGGGAGGGTAAATATGTGTCTTCCGTCAAACCAGTTGTCAAAACACTTCCAAGTCAAATTAACCAATGTCCTGCTGGGATAACCATTGCAAAGAAGGAGGAGAAGTGGTTTATAAGGACCGTTGTTCTGGACCACAACCATGATCTTTGCCCAAATAACTCCAAACTATTTGCAGCGAATAGAAAGTTAAGCATGCAAGCAAAACACACCTTGGAGGTCAACCATGATGCTGGAGTTAGGTTAAATAAGAGTTTCCTTAGCATTGTGAACGATGCCGGGGGCTATGAAAACATGGACTTCGTCGAGCGGGACGCTCGAAACTACATTGGCCAACATAGAAGATCTTTATGTAAGGATGGTGATGGTCAGGCACTCCTACGACACTTTTCTTCAATGAAAGATAGAAATAACGAGTTCTTCTATGACATTGCACTGGATGAAGCGAATAAAATCTGTAGTGTGTTTTGGGCTGATGCAAGAAGTTGTGCTGCATGTGAAGAATTTGGTGATGTTGTTTCCTTTGACACAACTTACTTAACAAATAAGTACGACATGCCATTTGCGCCTTTTGTTGGAGTTAACCATCATGGACACTCCATTTTACTTGGTTGTGGATTGTTGTCTTCGGAAGACACTGTCTCATTTGTATGGTTGTTCCAATGTTGGCTAAGATGCATGCGTAATAAGAGTCCTCAAGGTATTATTACTGACCAATGCAGGGCAATGGCCAACGCTATTGAACAAGTCTTTCCTGATACGAGGCACAGGTGGTGTTTATGGCACATCCTGAAGAAGTTGCCTGAAAAATTGCACGGGTATAGAAATAATCCCTCTATCAAAACCGAACTACATGCGCTTATATATGATTGTGTTTGTCCAAGACAATTTGAAAACGGTTGGGAGGAACTACTTACCAAACATGGATTGGAGCAAAATGAATAG 1176 0.4014 MSTHTIDVDEVNEYNDNVDDRNESLMEMDPTVHMCFESMIKAKKFYTNYAIRSGFTVRTRTSKKDKDNNVYYLRIVCLREGKYVSSVKPVVKTLPSQINQCPAGITIAKKEEKWFIRTVVLDHNHDLCPNNSKLFAANRKLSMQAKHTLEVNHDAGVRLNKSFLSIVNDAGGYENMDFVERDARNYIGQHRRSLCKDGDGQALLRHFSSMKDRNNEFFYDIALDEANKICSVFWADARSCAACEEFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGHSILLGCGLLSSEDTVSFVWLFQCWLRCMRNKSPQGIITDQCRAMANAIEQVFPDTRHRWCLWHILKKLPEKLHGYRNNPSIKTELHALIYDCVCPRQFENGWEELLTKHGLEQNE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10266g00002 391 PANTHER OS01G0519700 PROTEIN 22 390 - -
Vium10266g00002 391 Pfam FAR1 DNA-binding domain 44 128 IPR004330 -
Vium10266g00002 391 Pfam MULE transposase domain 249 343 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10266g00002 Vium-Chr10266 12621 13796 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium10266g00002 MULE 1.8e-34 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10266g00002 - - var:108341492 627.476