Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10259g00006 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCGACGAGTAGGCAAGTCACGTTCTCGAAACGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATTTTCTCCAGCACCGGAAAACTCTACGATTTCGCCAGCTCCAGCATGAAATCAGTTATTGACCGATACAACAAATCAAAAGAAGAAAATTGTCAACTTGGGAGTTCGGCCTCCGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGCCACCGAAAAATCATGGGGGAGGAACTGTCAGGTTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCGCGGTGTCCGTATGAAAAAGGATCAACTTCTAATGGATGAAATACAAGACCTAAATCGAAAGGGAAACCTCATACGCCAAGAAAATGTGGAACTGTATAAGAAGGTCCATGGAACAAAAGATGATAGCGAAACAAACAGAGATTATGTTCTCACAAATGGTCTAGGCATAGGAGAGGATTTGCATGTGCCCGTGAATCTCCAGCTAAGCCAGCCACAGCAACACTATAAGGCTCCTTCAGGAACTGCAAAATTGGGCAGATTGCAATTGCATTGA 678 0.4322 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVIDRYNKSKEENCQLGSSASEIKFWQREAAMLRQQLHNLQESHRKIMGEELSGLTVKELQNLENQLEISLRGVRMKKDQLLMDEIQDLNRKGNLIRQENVELYKKVHGTKDDSETNRDYVLTNGLGIGEDLHVPVNLQLSQPQQHYKAPSGTAKLGRLQLH 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10259g00006 225 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium10259g00006 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium10259g00006 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium10259g00006 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium10259g00006 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Vium10259g00006 225 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Vium10259g00006 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium10259g00006 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium10259g00006 225 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Vium10259g00006 225 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vium10259g00006 225 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium10259g00006 225 Coils Coil 86 106 - -
Vium10259g00006 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium10259g00006 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium10259g00006 225 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vium10259g00006 225 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10259g00006 Vium-Chr10259 21393 44411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10259g00006 1 213 MADS-box Gene Family AT4G37940 65.421 2.13e-94 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium10259g00006 K-box 2.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10259g00006 K09264 - gmx:100812413 402.134