Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10259g00003 ATGTCAAGAAGTTTACAAATTCATGACATATTATTGAGGCACAAATATTACTTAGTTGAATCTGCACACATGAAATCAGTTATTGACCGATACAACAAATCAAAAGAAGAAAATTGTCAACTTGGGAGTTCGGCCTCCGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGCCACCGAAAAATCATGGGGGAGGAACTGTCAGGTTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCGCGGTGTCCGTATGAAAAAGGATCAACTTCTAATGGATGAAATACAAGACCTAAATCGAAAGGGAAACCTCATACGCCAAGAAAATGTGGAACTGTATAAGAAGGTAAACCTAATTTGTCAAGAAAACATGGAATTGAAAAAGAAGGTCCATGGAACAAAAGATGATAGCGAAACAAACAGAGATTATGTTCTCACAAATGGTCTAGGCATAGGAGAGGATTTGCATGTGCCCGTGAATCTCCAGCTAAGCCAGCCACAGCAACACTATAAGGCTCCTTCAGGAACTGCAAAATTGGGGATACCAATTTTAATCCAATCAGGACACATGCAGGAGCATATCGCCTACCATTGGATGAACTGA 651 0.3902 MSRSLQIHDILLRHKYYLVESAHMKSVIDRYNKSKEENCQLGSSASEIKFWQREAAMLRQQLHNLQESHRKIMGEELSGLTVKELQNLENQLEISLRGVRMKKDQLLMDEIQDLNRKGNLIRQENVELYKKVNLICQENMELKKKVHGTKDDSETNRDYVLTNGLGIGEDLHVPVNLQLSQPQQHYKAPSGTAKLGIPILIQSGHMQEHIAYHWMN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10259g00003 216 Pfam K-box region 46 132 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium10259g00003 216 Coils Coil 48 68 - -
Vium10259g00003 216 ProSiteProfiles K-box domain profile. 48 138 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10259g00003 Vium-Chr10259 18385 44094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10259g00003 24 201 MADS-box Gene Family AT3G57230 56.742 3.00e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10259g00003 K09264 - gmx:100812413 319.701