Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10253g00005 ATGGAAACCCTTATTGCAAAAATAAGCATCACACTCCTATTCATGTTTTCAATCTTCTCAATAGCCTCATCAAGAACAACACCAGCTTCATCCAGCAACATAGATTGGTGGTGCAACCTAACTCCACACCCTGTGCCATGCAAACACTACATCACCACCACTCAAACGAAGAGCCACCGTTTCACATTGATCAAGCACAGAACTATCTTCCGAGGAATGCTCGTTGAACATGCCCTAAACCAGGCTCTCATCATGCAGAAAGAAGCACTTCACTCTGACCAAACCAGCATGCCAACAAAGAACCACAGAACCGTGCACGGTGATTGCGTGAAGCTCTATGGAAAAACCATCTTCCACCTCAATCGCACCCTCGAGTGCTTCCACGGGAACCAGAACTGCTCCTCGGTTGATGCACAGACATGGCTCAGCACCGCCCTAACTAACATTCAAACGTGTCAAGATGGAAAAATCGAACTTGGTGTCGAAGATTCCAACAAGAACAACAACAATGTGACTGAGATGATAAGGAACAGCTTGGCCATCAACATGGACTTCATGAAACACGAACATCACACGGAAATGGCTCACGAAGAAGCGTTTCCAAGATGGTTTTCAAAGCCGGAGAGGAAACTGTTGCAGTCCAGAACGATAAAGGCTCAGGCAGTGGTGGCAAAAGATGGTTCTGGGGATTTCAGAACCGTGCAAGATGCTCTCAATTCTGCGGCAAACAGGAAGGTGAAGACGAGGTTTGTGATACATGTGAAGAAAGGGGTTTATAAGGAGAATATCGAGGTTGCTGTGCACAATGACAACATCATGCTGGTTGGTGATGGAATCAGAAACACTGTAATCACGAGTAGCAGAAGTGTTCAACAGGGTTACACCACTTATAGCTCTGCAACTGCTGGCATAGATGGTCTCCACTTCATCGCAAGGGACATCACCTTCCAAAACACCGCCGGAGCTCAAAAGGGTCAAGCGGTGGCGCTCCGGTCAGCCTCCGATCTCTCCGTCTTCTACCGGTGCGCCATCGTGGGCTTCCAAGACACGCTCATGGCCCATGCGCAGCGCCAATTTTACAGGCAATGCTACATCTACGGCACCGTTGACTTCATATTTGGCAATGCAGCAGTGGTGTTGCAAAACTGTTACATTTACGCCAGAAAACCCTTAGAGGGTCAAGCCAACATGATCACGGCCCAAGGCCGAGGTGACCCGTTTCAGAACACTGGGATTTCAATCCACAATTCTCAAATTCGGGCTGCCCCAGACCTCAGGCCCGTTGTTGACAAATACAACACCTTCTTGGGTAGGCCTTGGCAACAATACTCCAGAGTTGTGGTCATGAAAACTTTCATGGACACCTTGGTGAGCCCATTGGGCTGGTCCCCATGGGGTGATTCTAATTTTGCCCAAGACACACTTTATTATGGTGAATATCAAAACTATGGGCCCGGTGCATCTACAACCAATAGAGTGAAATGGCCCGGGTTTCATGCGATCACAAGCCCTGCTGAAGCGTCTCAATTTACCGTCACACGCCTCCTTGCAGGCCCAACATGGTTGGGCTCCACAACTGTGCCATTTACCTCTGGGCTTTGA 1602 0.4869 METLIAKISITLLFMFSIFSIASSRTTPASSSNIDWWCNLTPHPVPCKHYITTTQTKSHRFTLIKHRTIFRGMLVEHALNQALIMQKEALHSDQTSMPTKNHRTVHGDCVKLYGKTIFHLNRTLECFHGNQNCSSVDAQTWLSTALTNIQTCQDGKIELGVEDSNKNNNNVTEMIRNSLAINMDFMKHEHHTEMAHEEAFPRWFSKPERKLLQSRTIKAQAVVAKDGSGDFRTVQDALNSAANRKVKTRFVIHVKKGVYKENIEVAVHNDNIMLVGDGIRNTVITSSRSVQQGYTTYSSATAGIDGLHFIARDITFQNTAGAQKGQAVALRSASDLSVFYRCAIVGFQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVLQNCYIYARKPLEGQANMITAQGRGDPFQNTGISIHNSQIRAAPDLRPVVDKYNTFLGRPWQQYSRVVVMKTFMDTLVSPLGWSPWGDSNFAQDTLYYGEYQNYGPGASTTNRVKWPGFHAITSPAEASQFTVTRLLAGPTWLGSTTVPFTSGL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10253g00005 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 185 IPR035513 -
Vium10253g00005 533 Pfam Pectinesterase 221 518 IPR000070 GO:0030599|GO:0042545
Vium10253g00005 533 FunFam Pectinesterase 214 533 - -
Vium10253g00005 533 Pfam Plant invertase/pectin methylesterase inhibitor 33 181 IPR006501 GO:0004857
Vium10253g00005 533 Gene3D - 214 533 IPR012334 -
Vium10253g00005 533 NCBIfam pectinesterase inhibitor domain 9 182 IPR006501 GO:0004857
Vium10253g00005 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 182 IPR035513 -
Vium10253g00005 533 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Vium10253g00005 533 SUPERFAMILY Pectin lyase-like 216 532 IPR011050 -
Vium10253g00005 533 CDD PMEI-like_3 36 187 - -
Vium10253g00005 533 PANTHER PECTINESTERASE 14 523 - -
Vium10253g00005 533 SMART PMEI_2 29 181 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10253g00005 Vium-Chr10253 40247 42165 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10253g00005 29 533 Carbohydrate Esterase AT5G51500 54.386 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10253g00005 K01051 - gmx:100800413 922.924