Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10253g00003 ATGGCGAAAAGCCTTACCTTAATCATCACTGTCTTCATATCCTTGTTTTCTCTGTCTTCCACGGCCCCTTCAAGCAATATTTTCCCTAACGCCATTGATTTTTGGTGCAACAAAACCCCACATCCTCAAACATGCAAGCATTATTTTTCCTTCATAAATCACGACCCTCATCAAGACGGTATCCCAAAAACTGCATTTCAGTTCAAGAACCTCATCCTCAGAATTGCAATGCAGCAATCGGTGGAAGCCCAGATTCAGATCACGTGGTTGGGAACCAAATGCAGAAGCAAGCAAGAAAAAACAGCATGGTCAAACTGCGTAACCCTCTACCAAGACACCATCAACCTTCTCAACCAAGCACTTAACCCTACCAAACAAAGCACAAGCTATGATCTCCAAACATGGCTCAGCACAGCCCTAACCAACATTGACACATGCCAGACAGGGTTCCACGAGCTTCGAGTTATCGACAACGTTCTACCCCTCATTCCCAACAAGAACATCTCAGAGATCATAAGTGACTTTTTGGCTCTTAACAACGCTTCTTCCTTCATTCCTCCAAAGACTCACAAAAATGGCTTCCCCAGATGGTTATCTCCCCATGATAGGAAGCTTCTGGAGTCATCGCCACCATCATTGACACCAGATGTTGTGGTGGCTAAAGATGGTTCCGGGAACTTCGAGACCATCAAAGAAGCTTTGAAAGTAGTCCCCAAGATGAGCCAAAAGAGGTTTGCGATATATGTGAAACGTGGGGTTTACAATGAAAACATTGAGATTGAGAGTTCCATGAAGAATGTTATGCTGTATGGTGATGGTATGAAACTCACCATCATTTCTGGTAGCCGAAGTGTTGGAGGAGGTTGGACCACTTTTGATTCGGCAACCGTTGCGGTTAGAGGAGATGGATTCGTTGGACGTGGCATCACATTTCGCAACACTGCAGGAGCAGAGAAGCATCAAGCGGTGGCGGTGCGTTGTGGTGGTGACCTCTCGGTGTTCTATCGGTGTGGCTTTGAGGGCTACCAAGACACTCTGTATGTGCACTCACAGAGACAGTTCTACAGAGATTGCTACATCTATGGCACCGTCGATTTCATCTTTGGCAACGCTGCTGTGGTCTTCCAATCCTGCAACATTTATGCAAGAAGGCCAATGCAAAAACAGAAAAACGTCATAACAGCACAAGGTAGAACAGATCCAAATCAGAACACTGGGATTTGCATTGAGAATTCACGTGTTATGGCTGCAGAAGACCTAGCCCCAGAGCTGAGTTCCTTCAAAACATTCTTGGGAAGGCCATGGAGGGAGTATTCCAGGACAGTGTTCTTGCAAACTTACCTTGATCGATTGATTGACCCTGCAGGGTGGTTGGAGTGGAAAGACGACTTTGCCCTTCAGACTTTGTACTATGGAGAGTTCAAGAACCTTGGTCCTAGGGCTTCCACAAGAGATAGAGTGAAATGGCCTGGCTTCCATTCCATAACAAGTTCAACCGAAGCTTCAAAATTCACAGTTGAAAATTTCATTGGTGGAAGATCATGGTTACCAGGCACAGGCATTCCATTTATCCCATGA 1578 0.4563 MAKSLTLIITVFISLFSLSSTAPSSNIFPNAIDFWCNKTPHPQTCKHYFSFINHDPHQDGIPKTAFQFKNLILRIAMQQSVEAQIQITWLGTKCRSKQEKTAWSNCVTLYQDTINLLNQALNPTKQSTSYDLQTWLSTALTNIDTCQTGFHELRVIDNVLPLIPNKNISEIISDFLALNNASSFIPPKTHKNGFPRWLSPHDRKLLESSPPSLTPDVVVAKDGSGNFETIKEALKVVPKMSQKRFAIYVKRGVYNENIEIESSMKNVMLYGDGMKLTIISGSRSVGGGWTTFDSATVAVRGDGFVGRGITFRNTAGAEKHQAVAVRCGGDLSVFYRCGFEGYQDTLYVHSQRQFYRDCYIYGTVDFIFGNAAVVFQSCNIYARRPMQKQKNVITAQGRTDPNQNTGICIENSRVMAAEDLAPELSSFKTFLGRPWREYSRTVFLQTYLDRLIDPAGWLEWKDDFALQTLYYGEFKNLGPRASTRDRVKWPGFHSITSSTEASKFTVENFIGGRSWLPGTGIPFIP 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10253g00003 525 SUPERFAMILY Pectin lyase-like 214 524 IPR011050 -
Vium10253g00003 525 NCBIfam pectinesterase inhibitor domain 4 179 IPR006501 GO:0004857
Vium10253g00003 525 Pfam Plant invertase/pectin methylesterase inhibitor 31 177 IPR006501 GO:0004857
Vium10253g00003 525 FunFam Pectinesterase 211 525 - -
Vium10253g00003 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 181 IPR035513 -
Vium10253g00003 525 Gene3D - 211 525 IPR012334 -
Vium10253g00003 525 PANTHER PECTINESTERASE 13 517 - -
Vium10253g00003 525 ProSitePatterns Pectinesterase signature 1. 241 260 IPR018040 -
Vium10253g00003 525 SMART PMEI_2 27 178 IPR006501 GO:0004857
Vium10253g00003 525 CDD PMEI-like_3 35 181 - -
Vium10253g00003 525 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Vium10253g00003 525 Pfam Pectinesterase 216 512 IPR000070 GO:0030599|GO:0042545
Vium10253g00003 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 180 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10253g00003 Vium-Chr10253 29548 31244 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10253g00003 8 523 Carbohydrate Esterase AT2G45220 55.899 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10253g00003 K01051 - gmx:100776412 878.241