Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10250g00001 ATGGAAAAGGATATCTGTGATCTTTCTCAAACATGGGATGGTGATAATGGAAACGCTACTGAGAAAAGGCTCAGGTTATTTGGCTTTGAGCTAAACCCTTCTAAAGAAAGCTGTGTCAAAGAGTCTGGTGAAGGAGATGAAAGTGTAAACTCCTCTAACTCAGTCTCATCAGGAGGAGACAAAACCGTGCAAGAAAAAACCTCTGCCAAAGACCCAGATGAGAAGAAGTTCGAGTGCCAGTACTGTTTCAAAGAATTTGCAAATTCACAAGCATTAGGAGGGCACCAAAATGCCCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAACTTCAATCCATAAACCGTTACCTCCAACACCCTTTTCAAACCAGCAATAGATTTGCTTACCAAACCTCAGATAGTCCTTGGTTCTATGACCCCTCTACCTATAATTCTGAGTTCACTCTTTGTGAAGAACCTCAGATTAGCTTCAAATCAAATGTTATGGATACCAACTTTTCTTGTGATCAGAAATCTAGTTGGTATTCTGTGGCATCGCACCCCCCTTCACAACAAGATACTTGCATGTTTACTTTCTCCAATGCAAATAATAACTCTCCTTTCATCTATAAACCTTGCCACTTCCCTTCTTCAAACCAGAGTCATACTAATGCCCTAGATCTTCAACTAGGCCTCAACTTGGAGTCAAATACAACAACTTCTCTAAGGAGGATGTAA 720 0.4056 MEKDICDLSQTWDGDNGNATEKRLRLFGFELNPSKESCVKESGEGDESVNSSNSVSSGGDKTVQEKTSAKDPDEKKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQSINRYLQHPFQTSNRFAYQTSDSPWFYDPSTYNSEFTLCEEPQISFKSNVMDTNFSCDQKSSWYSVASHPPSQQDTCMFTFSNANNNSPFIYKPCHFPSSNQSHTNALDLQLGLNLESNTTTSLRRM 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10250g00001 239 Gene3D Classic Zinc Finger 50 131 - -
Vium10250g00001 239 SUPERFAMILY beta-beta-alpha zinc fingers 73 104 IPR036236 -
Vium10250g00001 239 PANTHER ZINC FINGER PROTEIN 5 18 229 IPR044299 GO:0010090
Vium10250g00001 239 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Vium10250g00001 239 MobiDBLite consensus disorder prediction 44 63 - -
Vium10250g00001 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Vium10250g00001 239 MobiDBLite consensus disorder prediction 37 70 - -
Vium10250g00001 239 FunFam zinc finger protein 5 51 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10250g00001 Vium-Chr10250 20338 21381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10250g00001 10 113 C2H2 Transcription Factor Family AT5G06650 40.187 5.05e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium10250g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10250g00001 - - gmx:100527006 391.349