Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1024g00002 ATGGAGATCACATCTATCAGAGAATTACCTGATATGGAAATGATGGAGGACCCTAATTTGCTCCGTCAGTGGCACCTGAGTTCTATTGATGACCCTAACTTACTGCCAATAGCTGCTGCTTTTGGAGAGACTTTTCAACAACACGCATTTACTTATCCAGACTTCAATCCCAAAGCATCCATGGAAACTACACTTATGGACATTGAAAGACCAACAAAACATCATAAAAACATCGGCTGGAATCCCATCAAAAGTTCTGCTCAGACATCAGATGCACAATATGTATCTTTCCCAAATCTTCTTTCGTTTATGGATTCCAATCACATAAGTCCATTGGGATTAGTGAAGGCCAATGAGGAGGCTTGTCCTATAACCAATAGCACAACTTCTCTGGACACTTTCTCTCAGGGAATCTTGGGGAATCATAACTATCTCTTTAAGGCATGCCAAGAGACCAAAAAGAATGGAAGACGTTCAAAAATTTCTCATCCTCAAGACCACATCATAGCTGAAAGAAAGCGAAGAGAGAAGCTCAGCCAGCGCTTCATTGCCTTATCTGCCCTTGTTCCTGGACTACAGAAGACGGACAAAGCTTCTATTCTTGGAGATGCTATCAGCCACTTGAAGCAATTGCAGGAGAAAGTAAAGGCTCTCGAGGAGGCACAAAACATGAAGAAAACTGTGGAGTCTGTGGTAATTGTGAAGAAATCTCAACTGTCCTATGATGTTAACAATTCTTCAGAATATGATGGTCCGTTATTTGAAGAAACAATTCCCGAAATTGAAGCAAGATTTTGTGGGAGAAATGTCCTCATAAGAGTTCACTGTGAGAAGACCAAAGGTGTGGTGGAAAAAACAATCCATGAAATTGAGAATCTCCACCTGAAAGTCACCAACAGCAATGCCATGGCATTTGGGAGATGCGCCATTGATATGACAATTATTGCTCAGATGGATATGGAATTTTGCATGGGAGTGAAGGATGTAGTGAGAAATCTCCGCTCATCTTTTACATCTTCCATGTGA 1026 0.4123 MEITSIRELPDMEMMEDPNLLRQWHLSSIDDPNLLPIAAAFGETFQQHAFTYPDFNPKASMETTLMDIERPTKHHKNIGWNPIKSSAQTSDAQYVSFPNLLSFMDSNHISPLGLVKANEEACPITNSTTSLDTFSQGILGNHNYLFKACQETKKNGRRSKISHPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASILGDAISHLKQLQEKVKALEEAQNMKKTVESVVIVKKSQLSYDVNNSSEYDGPLFEETIPEIEARFCGRNVLIRVHCEKTKGVVEKTIHEIENLHLKVTNSNAMAFGRCAIDMTIIAQMDMEFCMGVKDVVRNLRSSFTSSM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1024g00002 341 CDD bHLH_AtNAI1_like 162 237 - -
Vium1024g00002 341 PANTHER BHLH TRANSCRIPTION FACTOR 41 339 - -
Vium1024g00002 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Vium1024g00002 341 SMART finulus 168 217 IPR011598 GO:0046983
Vium1024g00002 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 226 IPR036638 GO:0046983
Vium1024g00002 341 Coils Coil 201 231 - -
Vium1024g00002 341 Pfam Helix-loop-helix DNA-binding domain 166 212 IPR011598 GO:0046983
Vium1024g00002 341 Gene3D - 157 236 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1024g00002 Vium-Chr1024 16496 18878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1024g00002 162 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 53.591 3.57e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1024g00002 HLH 7.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1024g00002 - - vun:114179595 631.328