Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10245g00002 ATGGGGAAAAAAGGAAGTTGGTTTTCAGCAGTGAAAAAAGTTTTCAGCCCAGATTCCAAAAAAGATAAGAAAAAACAGAAAAGTCACAAGTCAAGCAGTAACAAGGAGGGGGAAATTGCAGCAGATGTTAAATTAATTGAGGCTGAGAAAGAACAAAGCAAGCATGCTGCTTCTTTGGCTTTTGCCACTGCTGTTGCAGCAGAGGCTGCTGTTGCTGCTGCTCAGGCTGCTGCAGAGGTTGTTCGTCTCACAAGTATGCCACATTACACTGGAAAGACCATGGAAGAGATTGCAGCTGTCAAGATTCAGACTGTATTTCGTGGATATATGGCAAGAAGAGCATTGCGTGCCCTGAGAGGTTTGGTGAGGCTGAAAACCGTAGTGCAAGGGCAATCTGTTAAAAGACAAGCTTCTAGCACCCTACGAAGTATGCAAACTCTAGCAAGATTACAGTCTCAGATTCGTGAAAGGAGAATTAGAATGTCTGAAGAGAACCAAGCTCTTCAGCGCCAACTGCAGCAGAAACATGAAAAAGAACTTGAGAACCTGCATGCTGCTCAGGTTGGAGAAGAATGGGATGACAGTTTGCAGTCAAAGGAGCAAATTGAAGCCAAATTGTTGCACAAACAAGAAGCAGCTTTAAGAAGAGAGAGGGCTTTGGCCTATTCATTCTCACATCAGAAAACATGGAAGGGCACTTCAAAGTCATTAAATCCCACATTTATGGACCCAAACAATCCCCAATGGGGGTGGAGTTGGTTAGAGAGGTGGATGGCTACTCGGCCATGGGATGGCCACAGCACTGCGGATCACAATGATCATGGATCTGTGAAGAGTGCAGCAAGCAGGGCCATGACAGTAGGAGAAATTGTGAAAGGTTATTCTCTACAAGACCATAACCATGACAAAAGAGCTTCCCCTTTTGGCCAAAAGGCAAGAAGACCATCCCCTCACATTTCACCTTCAAAGGCACCATCTGCTAGTGGCAAGGCAAGGCCATCAAGCTCAAAGGGTAGTGTGTTCTGGGGTGGAGATGAGGACTCAAGAAGCATGTTCAGCATTCAATCAGAGAGATATCGCCGGCACAGCATTGCAGGATCCTCAGTGAGAGATGATGAGAGTCTTGCAAGCTCCCCTGCCATTCCAAGTTATATGGCACCTACAAGCTCAGCCAAGGCCAGGTTCAAAATCCAAAGGCCTTCACCTGAGAAAGGAGGTGCTGCTGTAAGGAAACGTCTTTCTTTCTCTCCTTCAGCTGCTCCAAGAAGGCATTCTGATCCTCCTAAACCCTAA 1293 0.4617 MGKKGSWFSAVKKVFSPDSKKDKKKQKSHKSSSNKEGEIAADVKLIEAEKEQSKHAASLAFATAVAAEAAVAAAQAAAEVVRLTSMPHYTGKTMEEIAAVKIQTVFRGYMARRALRALRGLVRLKTVVQGQSVKRQASSTLRSMQTLARLQSQIRERRIRMSEENQALQRQLQQKHEKELENLHAAQVGEEWDDSLQSKEQIEAKLLHKQEAALRRERALAYSFSHQKTWKGTSKSLNPTFMDPNNPQWGWSWLERWMATRPWDGHSTADHNDHGSVKSAASRAMTVGEIVKGYSLQDHNHDKRASPFGQKARRPSPHISPSKAPSASGKARPSSSKGSVFWGGDEDSRSMFSIQSERYRRHSIAGSSVRDDESLASSPAIPSYMAPTSSAKARFKIQRPSPEKGGAAVRKRLSFSPSAAPRRHSDPPKP 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10245g00002 430 MobiDBLite consensus disorder prediction 321 335 - -
Vium10245g00002 430 MobiDBLite consensus disorder prediction 17 37 - -
Vium10245g00002 430 ProSiteProfiles IQ motif profile. 95 123 IPR000048 GO:0005515
Vium10245g00002 430 Pfam IQ calmodulin-binding motif 98 116 IPR000048 GO:0005515
Vium10245g00002 430 MobiDBLite consensus disorder prediction 293 347 - -
Vium10245g00002 430 MobiDBLite consensus disorder prediction 364 430 - -
Vium10245g00002 430 Coils Coil 147 181 - -
Vium10245g00002 430 PANTHER IQ-DOMAIN 5-RELATED 1 427 - -
Vium10245g00002 430 SMART iq_5 94 116 IPR000048 GO:0005515
Vium10245g00002 430 MobiDBLite consensus disorder prediction 295 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10245g00002 Vium-Chr10245 640 6169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10245g00002 1 429 IQD Protein Family AT5G03040 48.491 2.26e-130 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10245g00002 - - gmx:100780294 603.208