Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10245g00001 ATGGGGAAAAAAGGAAGTTGGTTTTCAGCAGTGAAAAAAGTTTTCAGCCCAGATTCCAAAAAAGATAAGAAAAGTCACAAGTCAAGCAGTAACAAGGAGGGGGAAATTGCAGCAGATGTTAAATTAATTGAGGCTGAGAAAGAACAAAGCAAGCATGCTGCTTCTTTGGCTTTTGCCACTGCTGTTGCAGCAGAGGCTGCTGTTGCTGCTGCTCAGGCTGCTGCAGAGGTTGTTCGTCTCACAAGTATGCCACATTACACTGGAAAGACCATGGAAGAGATTGCAGCTGTCAAGATTCAGACTGTATTTCGTGGATATATGGCAAGAAGAGCATTGCGTGCCCTGAGAGGTTTGGTGAGGCTGAAAACCGTAGTGCAAGGGCAATCTGTTAAAAGACAAGCTTCTAGCACCCTACGAAGTATGCAAACTCTAGCAAGATTACAGTCTCAGATTCGTGAAAGGAGAATTAGAATGTCTGAAGAGAACCAAGCTCTTCAGCGCCAACTGCAGCAGAAACATGAAAAAGAACTTGAGAACCTGCATGCTGCTCAGGTTGGAGAAGAATGGGATGACAGTTTGCAGTCAAAGGAGCAAATTGAAGCCAAATTGTTGCACAAACAAGAAGCAGCTTTAAGAAGAGAGAGGGCTTTGGCCTATTCATTCTCACATCAGAAAACATGGAAGGGCACTTCAAAGTCATTAAATCCCACATTTATGGACCCAAACAATCCCCAATGGGGGTGGAGTTGGTTAGAGAGGTGGATGGCTACTCGGCCATGGGATGGCCACAGCACTGCGGATCACAATGATCATGGATCTGTGAAGAGTGCAGCAAGCAGGGCCATGACAGTAGGAGAAATTGTGAAAGGTTATTCTCTACAAGACCATAACCATGACAAAAGAGCTTCCCCTTTTGGCCAAAAGGCAAGAAGACCATCCCCTCACATTTCACCTTCAAAGGCACCATCTGCTAGTGGCAAGGCAAGGCCATCAAGCTCAAAGGGTAGTGTGTTCTGGGGTGGAGATGAGGACTCAAGAAGCATGTTCAGCATTCAATCAGAGAGATATCGCCGGCACAGCATTGCAGGATCCTCAGTGAGAGATGATGAGAGTCTTGCAAGCTCCCCTGCCATTCCAAGTTATATGGCACCTACAAGCTCAGCCAAGGCCAGGTTCAAAATCCAAAGGCCTTCACCTGAGAAAGGAGGTGCTGCTGTAAGGAAACGTCTTTCTTTCTCTCCTTCAGCTGCTCCAAGAAGGCATTCTGATCCTCCTAAACCCTAA 1284 0.4634 MGKKGSWFSAVKKVFSPDSKKDKKSHKSSSNKEGEIAADVKLIEAEKEQSKHAASLAFATAVAAEAAVAAAQAAAEVVRLTSMPHYTGKTMEEIAAVKIQTVFRGYMARRALRALRGLVRLKTVVQGQSVKRQASSTLRSMQTLARLQSQIRERRIRMSEENQALQRQLQQKHEKELENLHAAQVGEEWDDSLQSKEQIEAKLLHKQEAALRRERALAYSFSHQKTWKGTSKSLNPTFMDPNNPQWGWSWLERWMATRPWDGHSTADHNDHGSVKSAASRAMTVGEIVKGYSLQDHNHDKRASPFGQKARRPSPHISPSKAPSASGKARPSSSKGSVFWGGDEDSRSMFSIQSERYRRHSIAGSSVRDDESLASSPAIPSYMAPTSSAKARFKIQRPSPEKGGAAVRKRLSFSPSAAPRRHSDPPKP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10245g00001 427 ProSiteProfiles IQ motif profile. 92 120 IPR000048 GO:0005515
Vium10245g00001 427 Coils Coil 144 178 - -
Vium10245g00001 427 SMART iq_5 91 113 IPR000048 GO:0005515
Vium10245g00001 427 MobiDBLite consensus disorder prediction 292 306 - -
Vium10245g00001 427 Pfam IQ calmodulin-binding motif 95 113 IPR000048 GO:0005515
Vium10245g00001 427 MobiDBLite consensus disorder prediction 318 332 - -
Vium10245g00001 427 PANTHER IQ-DOMAIN 5-RELATED 1 424 - -
Vium10245g00001 427 MobiDBLite consensus disorder prediction 290 344 - -
Vium10245g00001 427 MobiDBLite consensus disorder prediction 361 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10245g00001 Vium-Chr10245 640 6169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10245g00001 1 426 IQD Protein Family AT5G03040 48.276 2.45e-129 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10245g00001 - - gmx:100809448 595.89