Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10240g00001 AACGACCACTTGGGTGCTACATTTGTTTGTGTTCCCTCCAATATAATTGTTATCGGCATTACCTTCCAGAATTCGTATAATCTTGTCGGGTCAGAAACCATTGAACCTGCACCAGCAGCAGCCATATACGGTGACAAATCTGTGTTCATTAAGTGTGGTTTCGAAAGTTATCAAGATACTCTCTTTGATGCACATGGTCGTCATTATTTCAAAGATTGTTACGTTGAAGGTGAAGTTGACTTCATTTATGGCAACGGTCAATCTTACTATGAGAATTGTATCATTAATGCGACGCTTGGAAAATCTCCTCCAGGTTTTGTAACAGCACAATCTCGAGGATCAGAAAAAGAAGATAGTGGTTTTGTTTTCAGAGGAGGTTGTGTGATTGGAAATGGTGAAGTGAAGCTTGGAAGAGCTTATGGAGCTTATTCAAGAGTTATATTTTATGGAACATATTTATCTTCCTTAGTCTCCCCTCAAGGCTGGGATGCTTGGGGCTACACTGGCAAAGAGTCTAGGTTTACTTATGGTGAGGTAGAGTGTAGTGGAGAAGGAGCAAACGCTAGCGGGAGCGTTATGTGGGAGAAGAAGCTTACAAATTCGCAGTTGGAAGATTTTTCTTTGTCATCCTTTATCAATCAAGATGGATGTCTTTCCTACTTACCAGTCAAATTTTAA 678 0.4027 NDHLGATFVCVPSNIIVIGITFQNSYNLVGSETIEPAPAAAIYGDKSVFIKCGFESYQDTLFDAHGRHYFKDCYVEGEVDFIYGNGQSYYENCIINATLGKSPPGFVTAQSRGSEKEDSGFVFRGGCVIGNGEVKLGRAYGAYSRVIFYGTYLSSLVSPQGWDAWGYTGKESRFTYGEVECSGEGANASGSVMWEKKLTNSQLEDFSLSSFINQDGCLSYLPVKF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10240g00001 225 Pfam Pectinesterase 5 214 IPR000070 GO:0030599|GO:0042545
Vium10240g00001 225 Gene3D - 2 225 IPR012334 -
Vium10240g00001 225 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 218 - -
Vium10240g00001 225 SUPERFAMILY Pectin lyase-like 4 224 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10240g00001 Vium-Chr10240 30 927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10240g00001 6 171 Carbohydrate Esterase AT2G19150 47.368 8.45e-51 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10240g00001 - - vum:124819525 471.085