Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1023g00002 ATGATCAAGCGCTCCGGGCGGCAGCCGCCGCCGGAGTCGCTTGCAGACAAGATCTACAACCTCCGGGGAGCGTTTCTCATGGTAGCGGTTCCGCTCCTCCTCGTCGCCCTCGTGCTCTACGCCATGCCTTCCGCCTCCTCCAACGAGTCCATCGAAGACTACGCCCTAACGCACCGCAAGGCTGCCCCCGATCGGAAAACTGCCTTCGCCGTCATCTTCGATGCCGGTAGCTCCGGTAGCCGTGTCCACGTCTTCCGTTTCGACCAGAACTTGGATCTCGTTCCCATCGGGAATGACCTCGAGCTTTTCGTTCAGATTAAACCTGGTTTGAGTGCTTATGCACAGAATCCACAACAGGCAGCTGAATCTTTGATTACACTATTGGATAAAGCTGAGAGTGTTGTTCCTCAGGAGTTTCGGCCGAAGACACCTGTCAGAGTTGGGGCAACTGCAGGGTTGAGGGCTTTGGAAGGGGATGCTTCTGACAGGATTTTGCAAGCGGTTCGGGATTTGCTTAAGCAAAGAAGCACTCTAAAATCTGATTCTGATTCGGTAAGAGTGCTGGATGGAACACAAGAAGGTGCTTTTCAATGGGTGACTATCAACTATCTACTGGGAAACCTAGGAAGAGATTATTCAGAGACAGTTGGGGTAGTTGATCTTGGAGGTGGATCTGTTCAGATGGCATATGCCATCTCAGAGACAGATGCTACCGGGGCTCCAACTGTATCAGTTGGAGAGGACCAATATGTCAAGGAGATGTTCCTTAGGGGAAGGAAATATTACCTCTATGTTCACAGTTACTTGGGCTATGGTTTACTAGCAGCTCGTGCGAAGATTTTAAAGGTTTCAGATGATTTTGGAAACCCTTGCATCTTAGATGGCTTTAACGGAACTTACAAATATGGAGGAAAGTCGTTTAAGGCTTCATCCTATCTTTCTGGTGCAAGCTTGAATGAATGCAAAAGCATAGCTCTTAAGGCTCTCCAGGTTAACGAGTCAAAATGCACACATATGAAGTGCACTTTTGGTGGGATATGGAATGGTGGTGGCGGTGATGGACAGAAAAATCTTTTTGTTGCCTCATTTTTCTTTGACCGGGCAGCTGAGGCTGGTTTTGCCGACCCAAACTCACCCGTTGTGAAGGTTCGTCCCGTGGATTTCGAGGCTGCATCTAAGCAAGCTTGTCGAACAAAGATTGAAGATGTCAAATCCTTTTATCCACTTGTTGAGGAAGGGAACCGTCCATATTTATGCATGGATCTCTTATACCAATATACATTGCTTGTTGATGGATTCGGCCTAGATCCATGGCAACAGATGACGTTAGTGAAGAAAGTTAAATACCACGATGCTCTTGTTGAGGCTGCATGGCCCTTAGGCAGCGCCATAGAAGCTGTATCATCTACATAA 1413 0.4805 MIKRSGRQPPPESLADKIYNLRGAFLMVAVPLLLVALVLYAMPSASSNESIEDYALTHRKAAPDRKTAFAVIFDAGSSGSRVHVFRFDQNLDLVPIGNDLELFVQIKPGLSAYAQNPQQAAESLITLLDKAESVVPQEFRPKTPVRVGATAGLRALEGDASDRILQAVRDLLKQRSTLKSDSDSVRVLDGTQEGAFQWVTINYLLGNLGRDYSETVGVVDLGGGSVQMAYAISETDATGAPTVSVGEDQYVKEMFLRGRKYYLYVHSYLGYGLLAARAKILKVSDDFGNPCILDGFNGTYKYGGKSFKASSYLSGASLNECKSIALKALQVNESKCTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEAGFADPNSPVVKVRPVDFEAASKQACRTKIEDVKSFYPLVEEGNRPYLCMDLLYQYTLLVDGFGLDPWQQMTLVKKVKYHDALVEAAWPLGSAIEAVSST 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1023g00002 470 CDD NBD_sugar-kinase_HSP70_actin 71 230 - -
Vium1023g00002 470 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 188 203 IPR000407 GO:0016787
Vium1023g00002 470 Gene3D - 69 464 - -
Vium1023g00002 470 Gene3D Exopolyphosphatase. Domain 2 189 448 - -
Vium1023g00002 470 FunFam Apyrase 1 189 448 - -
Vium1023g00002 470 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 16 469 IPR000407 GO:0016787
Vium1023g00002 470 Pfam GDA1/CD39 (nucleoside phosphatase) family 65 469 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1023g00002 Vium-Chr1023 84149 99014 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1023g00002 12 469 Calmodulin-binding Proteins AT3G04080 67.826 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1023g00002 K14641 - gmx:100804818 793.497