Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1023g00001 ATGGGAACCCCACAATCCAACAACTTGCCCCCAGGATTTAGGTTCCACCCTACAGATGAAGAGCTCATTCTTCATTACCTTAGGAAAAAGGTGGCCTCCATTCCTTTGCCAGTTTCCATCATTGCTGAGGTTGATATCTACAAGTGTGATCCATGGGAGCTACCAGCTAAGGCTGCGTTTGGGGAGAAAGAGTGGTACTTTTTCAGTCCGAGAGACCGGAAGTACCCAAATGGAGCTCGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCAACAGGCACTGATAAGAACATAGTTGCATCATTGGGTGGAGGAGTGAGAGAACATTTTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAAACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTTGACACCAATAAACCTGTTAGGATCAAAGACACTTCCATGAGATTGGATGACTGGGTTCTATGCCGGATATACAAGAAGTCGAAACACAGTCTAAGTTCAATCACAGAGGCAGCACAAACAGTGGAAATAAAAGAGCAAGAAGAAGCAGAAGATCAAGAAGAGCAAATGAAAGAAGGCTTTTCTTTTTCAGCAATCTCCAACACTGCAACACCTCTTCTCCCTCCTCCACAAGCCACACTCATATCTCAAAAATCTCTATCCTTCTCCAACCTCTTGGATGCAACAGACTTTTACATGCTCAGCACCATCTTATCAGAGAACCATAACTCCAGTAATTACCCAAACACAACTGAACCATTGTTCAACTCTGAGAATCTGGATCATGAAACCCAGCAGAATTTCTACAACAACAACACTGATATTAACAATAGTACCTGTTTCATTCAGAAGAACCCTTCGGCGATTGCCCACATGGATGAGAACATGATGTACCCTCCAAAGAAACACCATAGTTCCTCTTGCCATTTTCCTAACACCACCCTCCAAAACCAGAACCCCCAACGGAACTTCATCTTCAAGCAGCCTCACATGAATCACCAGCTACTTCCGGGTCCCCAATATCTTCAATTTCAGTGA 1056 0.446 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKCDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASLGGGVREHFGVKKALVFYKGKPPKGVKTNWIMHEYRLVDTNKPVRIKDTSMRLDDWVLCRIYKKSKHSLSSITEAAQTVEIKEQEEAEDQEEQMKEGFSFSAISNTATPLLPPPQATLISQKSLSFSNLLDATDFYMLSTILSENHNSSNYPNTTEPLFNSENLDHETQQNFYNNNTDINNSTCFIQKNPSAIAHMDENMMYPPKKHHSSSCHFPNTTLQNQNPQRNFIFKQPHMNHQLLPGPQYLQFQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1023g00001 351 Gene3D NAC domain 18 171 IPR036093 GO:0003677|GO:0006355
Vium1023g00001 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 271 - -
Vium1023g00001 351 SUPERFAMILY NAC domain 6 166 IPR036093 GO:0003677|GO:0006355
Vium1023g00001 351 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Vium1023g00001 351 ProSiteProfiles NAC domain profile. 9 166 IPR003441 GO:0003677|GO:0006355
Vium1023g00001 351 FunFam NAC transcription factor 56 18 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1023g00001 Vium-Chr1023 28240 30619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1023g00001 7 246 NAC Transcription Factor Family AT3G04070 64.198 2.36e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium1023g00001 NAM 2.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1023g00001 - - gmx:100817074 511.146