Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10215g00001 ATGGACATGAGAGACCAAGATAAGGTAATAGAGATGCCTAGCACTTTGGGTTATAACCTCTCCAATAGAAATTCGTCTTCCTCCAAGTTATCATCACCAATAGGGGAAAGAAGTGACCAACCTCCTCAATCTCACACGTTGATTTTCAGTGATCCACCCCAAACAACTTCACATCATCACCATCCCCTCAACCCCCCTAATTCTCTTCCACCAAACCCTCTTCAACTACCACATCCTCACAGACCCAGAAGAGATCCAGATCCAACTCCTATTTCTCCTCCTGTCATAACCACCCCAAGAACACAACCACACTCAACACCAACTTTCACGACAACATTCAGATACCGAGAATGTCTGAAGAATCATGCTGCCACCATGGGGGGTCATGTCACAGATAGGTGTGGGGAGTTTATGCCAAAAGGAGAAGAAGGCACCCCAGAATCCTTCAAGTGTACAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCTGAAGGCGAATCATCACAACATGTTCTCAACTACCACCTCACTTACCCCAACAAAAACAACAGAAACATTGTCATTCATTCTCCGCAATCTTACCTTCAGTTACCTACACCCCACCTTCACGGGGTGGTGGCTACCCCTTCAGGTGGGCCGGTTCAGCCCGCGATGTTGGGCTTTGGGGGGACCCCAGCTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCGATGATGCAGGGCAATTGTTATCAGTGCCACCACTGTCATCATCCAAGAAGAGGTTCAGGACAAAGTTCTCACAGCAACAAAAGGATAAGATGATGGAGTTTGCTGAGAAAGTGGGGTGGAAGATCCAGAAACAAGATGAACAGGAACTGCATCAGTTTTGCTCTCAGGTCGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA 963 0.4694 MDMRDQDKVIEMPSTLGYNLSNRNSSSSKLSSPIGERSDQPPQSHTLIFSDPPQTTSHHHHPLNPPNSLPPNPLQLPHPHRPRRDPDPTPISPPVITTPRTQPHSTPTFTTTFRYRECLKNHAATMGGHVTDRCGEFMPKGEEGTPESFKCTACECHRNFHRKEPEGESSQHVLNYHLTYPNKNNRNIVIHSPQSYLQLPTPHLHGVVATPSGGPVQPAMLGFGGTPAESSSEDLNMFQTDDAGQLLSVPPLSSSKKRFRTKFSQQQKDKMMEFAEKVGWKIQKQDEQELHQFCSQVGVKRQVFKVWMHNSKQAMKKKQM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10215g00001 320 NCBIfam homeobox domain, ZF-HD class 256 313 IPR006455 -
Vium10215g00001 320 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 102 313 - -
Vium10215g00001 320 FunFam Zinc-finger homeodomain protein 2 247 317 - -
Vium10215g00001 320 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 114 164 IPR006456 -
Vium10215g00001 320 MobiDBLite consensus disorder prediction 15 63 - -
Vium10215g00001 320 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 115 164 IPR006456 -
Vium10215g00001 320 SUPERFAMILY Homeodomain-like 252 317 IPR009057 -
Vium10215g00001 320 Gene3D - 248 317 - -
Vium10215g00001 320 MobiDBLite consensus disorder prediction 1 108 - -
Vium10215g00001 320 Pfam ZF-HD protein dimerisation region 113 165 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10215g00001 Vium-Chr10215 17249 19164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10215g00001 90 320 ZF-HD Transcription Factor Family AT2G18350 47.436 4.62e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium10215g00001 ZF-HD_dimer 6.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10215g00001 - - ccaj:109810490 424.476