Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10202g00007 GAGAAGAGAGAAGAAAATATGGCAAACTCTCCCAAAGAAGAAGAGGATGAGGCTTTCGTTTGTGCTTTTTTACTTTGCACTAATTATGTGTTTCCTTCAGTGCTCAATGCTGCTATTGAGCTTAAATTGTTTGAAATCATAGCAAAGGCACCACCACCAAATGCAGCAATGTCAGCCTCAGAAATTGCTTCTAAACTACCAACACAACACCTAGATAGGCTCCAGCGCATGCTGCGTTTGCTTTCTAACTATTCTCTGCTCACTTGTTGCACTCACACCAATGAAGATGGTAGCACTGAGACAACTTATGGACTCTCATCTGTTGGAAAATACTTTGCCAATGATGAAACAAAGGGTTCTTTCGGTCCCTTAAATACACTTTGCCAACATCCTACACTGTTAAAACTTTGGCAAAATTTTAAGGATGTGATAATTGATTCCGAGTTCGACCTATGCAAGAAGGTTCATGGAATGCCTTTCTACCAATGCACTGAAAGAGATCCACAACTGAATTATATTTTCAACAGATCAATGGCTAATATTTGCGACATAGAAATGAATAAGATTCTTGATGAATATAAAGGATTTGAAGGAGTGTCAACTCTTGTTGATGTGGGAGGTTGTACAGGGCAAACTCTCCACATGATAATCTCCAAGTACTCTACAATTAAGGGTATTAATTTTGACTTGCCCCAAGTAGTCGAAAAAGCAGCATCTTACCCAGGGATACAGCAAGTTGGAGGAGATATGTACCATTATGTGCCAAAGGGTGATGCTATGATTCTAAAGACTGTGTTGCACAATTGGTCAGATGAAGACTGCTTAAGCATTTTGAGGAACTGTCACAATGCACTGCCACAGAATGGAAAGGTGATTGTGATAGAATTTATAGCACCAGAAGAAGCATCAGAGTCGAATGTATCAAAGCTTGTTTCCACCCTCGACACCATCATGTATATCACAAGTGGTGGGAAGGAAAGAAGTGAAAAGGAGTACGAGAAATTGTGCACGCTTTCTGGATTCTCAAGATTTGAAGTTGTCTGCCGTGCCTTTTCTGTCTTAGGAACCATGGAATTTCACAAATGA 1086 0.4006 EKREENMANSPKEEEDEAFVCAFLLCTNYVFPSVLNAAIELKLFEIIAKAPPPNAAMSASEIASKLPTQHLDRLQRMLRLLSNYSLLTCCTHTNEDGSTETTYGLSSVGKYFANDETKGSFGPLNTLCQHPTLLKLWQNFKDVIIDSEFDLCKKVHGMPFYQCTERDPQLNYIFNRSMANICDIEMNKILDEYKGFEGVSTLVDVGGCTGQTLHMIISKYSTIKGINFDLPQVVEKAASYPGIQQVGGDMYHYVPKGDAMILKTVLHNWSDEDCLSILRNCHNALPQNGKVIVIEFIAPEEASESNVSKLVSTLDTIMYITSGGKERSEKEYEKLCTLSGFSRFEVVCRAFSVLGTMEFHK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10202g00007 361 Gene3D - 1 112 IPR036388 -
Vium10202g00007 361 PIRSF O-mtase 1 361 IPR016461 GO:0008168
Vium10202g00007 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 361 IPR016461 GO:0008168
Vium10202g00007 361 Pfam Dimerisation domain 34 82 IPR012967 GO:0046983
Vium10202g00007 361 SUPERFAMILY "Winged helix" DNA-binding domain 13 116 IPR036390 -
Vium10202g00007 361 Pfam O-methyltransferase domain 137 342 IPR001077 GO:0008171
Vium10202g00007 361 PANTHER O-METHYLTRANSFERASE 27 344 IPR016461 GO:0008168
Vium10202g00007 361 FunFam Caffeic acid 3-O-methyltransferase 1 112 - -
Vium10202g00007 361 Gene3D Vaccinia Virus protein VP39 113 361 IPR029063 -
Vium10202g00007 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 352 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10202g00007 Vium-Chr10202 62907 64482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10202g00007 15 353 Monolignol Biosynthesis Gene Families AT5G54160 46.939 1.94e-101 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10202g00007 - - gmx:100798347 436.802