Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10202g00001 ATGACATTAACCCAAATTCCTGAGAGATCATCAGTTGATATGGAATCATGTGTGCCTCCAGGATTCAGATTTCATCCAACAGAAGAGGAGCTTGTGGGGTACTATCTCAAGAGGAAGATAAACTCCCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCCTGGGACATACAAGACCAGTGCAAGTTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGCCATAAAGATAAGAAGTATCCTGCAGGAATAAGAACTAACAGGGCGACTGCTGCTGGATTCTGGAAAGCAACTGGAAGGGACAAGGCTGTTATGACCAAAAATAGAATCATAGGGATGAGAAAGACCTTGGTCTTCTACAAGGGACGTGCCCCTAATGGAAGGAAAACGGACTGGATTATGCATGAATATAGGCATCAAACCTCTGAACATGGTCCTCCACAGGAAGAAGGATGGGTCGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCAAGGTTATGAAGCATGGTGCAGTAGTAGTAGCCATCAACAACACTTTTACAAAGATCAAAGCTTTGCAAGACCCTTATCAATTGCTGACATTTTGAATGAAACAAATGTGCCTCATCACCCTGCAGAAGCTCCAAGCTTTAGTCTTCCTTTCAACTCAGATCAGCAGCACTTTATTCTGCCAAACCAAACTGTCATGGACAAACAGCTGATTGAGCTTCCTCAGCTAGATAGTCCAACTGCAAGTTTTGCAATGAAGGAGTGTAACCAACAACACCAGAATGGCCTCAGAAATGAGGAATATTGTAGTGAGGAAAGGAGCAATAGCAGTGCGCAAGGTATCGATTGGAAGAGTTTGGACAACTTGTTCGGGTCACAATTGAGTGACACAGCTTATTTTTCACATCCAAACTTGCCCTTGATGATGCCCCATAATAACCATGATCAAGCTAGTCATATCCTAGGATGCTTCCCAGATTCATAG 1002 0.4291 MTLTQIPERSSVDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDQCKLGYEQQNEWYFFSHKDKKYPAGIRTNRATAAGFWKATGRDKAVMTKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRQGYEAWCSSSSHQQHFYKDQSFARPLSIADILNETNVPHHPAEAPSFSLPFNSDQQHFILPNQTVMDKQLIELPQLDSPTASFAMKECNQQHQNGLRNEEYCSEERSNSSAQGIDWKSLDNLFGSQLSDTAYFSHPNLPLMMPHNNHDQASHILGCFPDS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10202g00001 333 Gene3D NAC domain 27 170 IPR036093 GO:0003677|GO:0006355
Vium10202g00001 333 SUPERFAMILY NAC domain 14 167 IPR036093 GO:0003677|GO:0006355
Vium10202g00001 333 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 259 - -
Vium10202g00001 333 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Vium10202g00001 333 ProSiteProfiles NAC domain profile. 18 167 IPR003441 GO:0003677|GO:0006355
Vium10202g00001 333 FunFam Nac domain-containing protein 86 27 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10202g00001 Vium-Chr10202 990 5941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10202g00001 14 333 NAC Transcription Factor Family AT1G71930 55.030 4.39e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium10202g00001 NAM 4.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10202g00001 - - var:108325420 686.797