Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10198g00001 ATGAAGAGTTTTCTATTGGGATGTGTGGCCACTGTGGAGAAAAATAAGCCTTATGTTGCAATGTCTTTTGTTCAGTTTGTGTATGCAGGAATGGCCTTGTTGTCCAAAGCTGCAATTTCCAAGGGAATGAGCCCTTATGTGTTTGTTGTTTATAGACAAGCCTTTGCATCAGTTGCTCTCTCTCCATTTGCTTTCTTTGACAGTAAGCAATCAGCACCTTTGTCATGCAACTTGTTGTGCAAATTGTTCCTAGTTTCTCTTGTTGGGTTAACTCTGAGTTCAAACCTTTACTATGTTTCAATCAACTACACCACTGCAACATTCGCTGCAGCCTCCTCAAACACTATCCCTGCCATTACTTTCATCATGGCTCTTTTAATCAGGGTGGAAAGCATTTCCATAAAACGTGCGCATGGTATAGCCAAGATTTTGGGGTCTGTTCTAAGCCTTTCTGGGGCAATTACATTTGGTTTAGTGAAGGGACCTCCCCTGAGTTTCATGAAATGGTATCAACAAAACCAGAACCAAACTCCTTCAACAATTGTTCATTACAAAGTTGACATCCTTAGAGGCCCTCTCATGATGCTCGCAGCAAACATTACATGGTCCTTGTGGCTTATCTTGCAGGGATTTGTTGTGAAGCAGTACCCTGCAAAACTTCGTCTCACAGCTCTGCAATGCTTCTTCAGCTTCATGCAGTCTACTGTTGTGGCTGTTGCAGTTGAGAGGCATAATCTTTCGGCATGGAAGCTTGGATGGGATATTCATCTTCTTTCTGTGGCATACTGTGGTATAGTCGTAACAGGCATTTGTTATTGGCTGCAAGTCTGCACAATAGAAACAAAAGGCCCAGTTTTCACAGCAATGTTCACTCCTCTTGCTCTTATAATCACAGCAATATTCTCAGCATTTTTGTGGAAAGAAACACTTTACTTGGGAAGTGTTGGTGGCACTATTTTACTAGTTGTTGGACTCTACAGTGTCCTATGGGGGAAGAGCAAGGAGAATGTAAAAGTTGAAAACCTACAACCTCAGCAAACAAAAGAGGAAACAAGATTGGAGTGCATTGTACAGCATTGA 1080 0.4194 MKSFLLGCVATVEKNKPYVAMSFVQFVYAGMALLSKAAISKGMSPYVFVVYRQAFASVALSPFAFFDSKQSAPLSCNLLCKLFLVSLVGLTLSSNLYYVSINYTTATFAAASSNTIPAITFIMALLIRVESISIKRAHGIAKILGSVLSLSGAITFGLVKGPPLSFMKWYQQNQNQTPSTIVHYKVDILRGPLMMLAANITWSLWLILQGFVVKQYPAKLRLTALQCFFSFMQSTVVAVAVERHNLSAWKLGWDIHLLSVAYCGIVVTGICYWLQVCTIETKGPVFTAMFTPLALIITAIFSAFLWKETLYLGSVGGTILLVVGLYSVLWGKSKENVKVENLQPQQTKEETRLECIVQH 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10198g00001 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 238 334 - -
Vium10198g00001 359 Pfam EamA-like transporter family 19 150 IPR000620 GO:0016020
Vium10198g00001 359 Pfam EamA-like transporter family 190 329 IPR000620 GO:0016020
Vium10198g00001 359 PANTHER WAT1-RELATED PROTEIN 16 344 IPR030184 GO:0016020|GO:0022857
Vium10198g00001 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10198g00001 Vium-Chr10198 3718 8230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10198g00001 16 336 Nodulin-like Gene Family AT2G39510 39.130 1.06e-83 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10198g00001 - - gmx:100800562 615.535