Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10190g00001 ATGATACCTTGCCCTCTTGGATCTTATTGCCCTAGTGCTGTACTCAATAGCACAACTGGTGTTTGTGAACCATATCTTTACCAACTGCCTCCAATGCAGCCAAATCATACCTGTGGAGGAGCAAATATTTGGGCAGATATTAGTAGCAGTAGTGAGATATTTTGTTCGGAAGGATCATATTGCTCCACCATTACAAAAAAAATTCCTTGTAGTAGTGGGCATTACTGTAGGATGGGTTCCACATCTGAGCAAAGCTGCTTCAAGTTGAGTTCATGTGATTCAAACACCGTGACCCAAAATATTCAAGCGTATGGAATCATGCTCATTGTTGCTTTGAGTACTTTGTTACTCATTATCTATAGCTGTTCTGACCAAGTTCTGACTACTAGAGAAAGGAGAATGGCAAAGTCCAGAGAAGCAGCAGCCAGAAGTGTAAGAAAGACTGCAAATGCTCGCCAAAGATGGAAAGATGCAAAAGATGCTGCTAAAAAGAGTGCAAGTGGACTGCAAGCTCAACTATCACGATCATTTACTTGGAAAAAGGACATAGATCCGGAAGAAATTAGAATTTTGAATCAACCAACTACTGAAACAAAGATAGAATTGTTTTCACATTCACATCCTATTACCTCACCTATGATTGGTAGCTCATATGCTGGGCCAAAGAGAAAGGGAAAAGAACCTAGTGATTTGATGCAGACCATGAATCAAGTGGAAAAGGATGTAAATGTGAGCAACATTCTTGCAGAAACAGAAATTCGAGCAAAAAATGTTACAGCAAAAGTGTCTAAGGAAAAACATCCGAATACACATAGCCAAATTTTTAAGTATGCATACGCTCAACTTGAGAAAGAAAAGGCTCAACAAGAAGAAAACAAGAACCTTACCTTCTCAGGAGTAATTAGTATGGCTACCAAAAGTGAACAAAGGAAAAGGCCTTTGATTGAAATATCTTTCAAAGATCTGACTCTTACTTTGAAAGCACACAATAAACTTATATTGAGATGTGTCACGGGGAAGATTAAACCTGGACGCATCACTGCTGTCATGGGTCCATCAGGTGCTGGCAAGACAACTTTTCTTTCTGCAATAGCTGGGAAGGCATTTGGATGCAAGGTGACTGGTTCGATTTTTGTAAATGAAAATAATGAATCAATCCACTCATTTAAGAAAATTATTGGTTTTGTGCCACAAGATGATATAGTTCATGGAAACCTGACTGTGGAAGAAAACTTCCGGTTCAGTGCACTGTGCAGGCTACCTGCTGACTTGCCAAAGCCAGAAAAAGTTCTGATTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCAGTGCGGAATTCTTTGGTTGGAACTGTAGAAAAGCGAGGAATCTCTGGAGGCCAAAGGAAACGTGTAAATGTTGGATTGGAAATGGTCATAGAACCTTCACTCATGATCCTGGATGAACCCACTTCTGGGTTGGACAGTGCATCATCTCAACTCCTTCTTAGAGCACTAAGACGGGAAGCTCTTGAAGGAGTGAACATTTGCATGGTGGTTCACCAACCCAGCTACGCTTTGTTTAATATGTTCGATGACTTGATACTCCTGGCAAAAGGTGGCCTTACTGTATATCATGGATCAGTCAAGAAAGTTGAAGAATACTTTGCAGACCTCGGGATAAATATACCAAAACGAATTAATCCTCCTGATTACTTCATTGACATTTTGGAAGGCATAGCAGTACCTAGTGGAAGTTCAGAAGTCAGTTATAAGGAGCTGCCACTTAGATGGATGCTTCATAATGGATACCCCATACCTCCTGATATGCAGCAGAATGCAGCACAACTTGGTATGTTTGAAACTGCAAACCCAGCTAGAGAAAAAGATCCCGATGGCTCTAGCCATGAAGAAAGAAGCTTTGCTGGAGAATTATGGCATGATGTGAGACATGCGATGGAACTAAAGGGGGAGAAAATAAGATTCAATTTTTTTAAATCGAAGGATTTATCTGAACGTAAAACTCCTGGTATATTCAAGCAATACAAATACTTCCTTATACGGGTTGGTAAACAGAGATTACGAGAATCTAAGATCCAAGCTATAGATTATTTAATATTATTACTTGCTGGAGCCTGCTTAGGATCACTTACCAAAGCTAGCGATCAGACCTTTGGTGCAGCTGGATACACCTATACAGTGATTGCTGTATCTCTTTTATGCAAAATATCTGCCCTGAGATCCTTTTCTCTAGACAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTCCTCTCCAAAGACACAATCGATCATTTCAATTCAGTGATCAAACCTGTGGTTTACCTGTCAATGTTCTACTTTTTTACCTATCCAAGATCAACTTTTGCAGATAATTACATTGTGCTGCTTTGTCTTGTATATTGTGTGACTGGCATAGCATATGCATTTGCCATACTCTTTGAACCCGGTGCAGCCCAGCTATGGTCGGTACTTCTTCCAGTTGTTTTTACTCTCATTGCGACACAGCCAAAAGATAGTAAATTTTTGAAGGATATAGCTTATTTTTGCTACCCTAGGTGGGCTTTAGAAGCGTTCATAATTGCAAATGCTGAAAGGTATCACGGGGTGTGGCTCTTAACTCGTTGTGGTTCACTACTGAAAAGTGGGTATAATCTTCATGATTGGGGTTTGTGCATATCTATCCTCATTCTCATGGGTGTAATTTCTCGGACAGTAGCATTTTTCTGTATGCTCACCTTTCTAAAGAAATAA 2775 0.4 MIPCPLGSYCPSAVLNSTTGVCEPYLYQLPPMQPNHTCGGANIWADISSSSEIFCSEGSYCSTITKKIPCSSGHYCRMGSTSEQSCFKLSSCDSNTVTQNIQAYGIMLIVALSTLLLIIYSCSDQVLTTRERRMAKSREAAARSVRKTANARQRWKDAKDAAKKSASGLQAQLSRSFTWKKDIDPEEIRILNQPTTETKIELFSHSHPITSPMIGSSYAGPKRKGKEPSDLMQTMNQVEKDVNVSNILAETEIRAKNVTAKVSKEKHPNTHSQIFKYAYAQLEKEKAQQEENKNLTFSGVISMATKSEQRKRPLIEISFKDLTLTLKAHNKLILRCVTGKIKPGRITAVMGPSGAGKTTFLSAIAGKAFGCKVTGSIFVNENNESIHSFKKIIGFVPQDDIVHGNLTVEENFRFSALCRLPADLPKPEKVLIVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVIEPSLMILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFNMFDDLILLAKGGLTVYHGSVKKVEEYFADLGINIPKRINPPDYFIDILEGIAVPSGSSEVSYKELPLRWMLHNGYPIPPDMQQNAAQLGMFETANPAREKDPDGSSHEERSFAGELWHDVRHAMELKGEKIRFNFFKSKDLSERKTPGIFKQYKYFLIRVGKQRLRESKIQAIDYLILLLAGACLGSLTKASDQTFGAAGYTYTVIAVSLLCKISALRSFSLDKLHYWRESDSGMSSLAYFLSKDTIDHFNSVIKPVVYLSMFYFFTYPRSTFADNYIVLLCLVYCVTGIAYAFAILFEPGAAQLWSVLLPVVFTLIATQPKDSKFLKDIAYFCYPRWALEAFIIANAERYHGVWLLTRCGSLLKSGYNLHDWGLCISILILMGVISRTVAFFCMLTFLKK 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10190g00001 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 550 IPR027417 -
Vium10190g00001 924 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 58 913 - -
Vium10190g00001 924 Pfam ABC transporter 336 486 IPR003439 GO:0005524
Vium10190g00001 924 ProSitePatterns ABC transporters family signature. 458 472 IPR017871 GO:0005524|GO:0016887
Vium10190g00001 924 FunFam ABC transporter G family member 24 311 553 - -
Vium10190g00001 924 SMART AAA_5 343 535 IPR003593 GO:0016887
Vium10190g00001 924 Pfam ABC-2 type transporter 515 924 IPR043926 GO:0140359
Vium10190g00001 924 CDD ABCG_EPDR 315 541 - -
Vium10190g00001 924 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 317 558 IPR003439 GO:0005524
Vium10190g00001 924 Gene3D - 302 557 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10190g00001 Vium-Chr10190 500 12152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10190g00001 341 547 Calmodulin-binding Proteins AT2G36910 26.106 1.52e-09 60.1