Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10186g00001 ATGTCTTGCTCCGTCGCGGTTTCCAATTCGCCGGTCTTCTCTCCCTCCTCTTCTCTCTTCTGCTCTAAGCCTTCCATCATCTCTTCTTCGCCCGAATCCCTTTCCCTCTCCCTCTCCCATCTCAAACCTTCCAACACTAACACGGCCTCCTCTTGTTCTTCTCCTTCTGCTGCGGCTGCTTCCTCCTCTCCTTCTTCTCCTTTTCGCCTTCGCCTTCCCAAGCCTCCCTCCGTCTTCTCTGCCTCCTCTGCTTCCTCCACCTCCCCCAACGGCACCGTTTTGAAGAGGAAGCGACCCGCCAGGCTCGACATACCCGTTTCCTCTCTCACCTTCGGGGTTCCGCCCACGCCCTCCGCTGCTGCGCGTGACGTCGTCGAGGCCGAGGAGGATGGCTTTGGGGTCTACTGCAAGAGAGGGAGGAGGGAGTACATGGAGGATCGTTACACCGCTGGGAATAATCTGCGCGGTGAAAACAAACTGGCTTTTTTTGGCATATTTGATGGGCACGGAGGTGCCAAGGCTGCTGAATATGCTGCAAATAACTTAGAGAAGAATATTTTAGATGAAGTGATTATGAGAGATGAAGATGATGCTGAGGAGGCAGTGAAGCGTGGGTACCTCAACACAGACTCAGATTTCCTGAAGGAGGAACTCCATGGTGGCTCTTGCTGTGTGACAGCATTGATTAGGAACGGCAACCTTGTTGTGTCCAACGCTGGTGATTGCCGTGCTGTCATTAGCAGAGGGGGTGTTGCTGAAGCCCTAACATCTGATCACAGGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAGAGCCTGGGTGGCTACGTGGATTTATGCCGCGGTATTTGGAGGATCCAAGGATCTCTTGCTGTGTCTAGAGGAATTGGAGATAGACACCTGAAACAATGGGTGACAGCAGAACCTGAGACCAAAGTTCTCAGAATTGAACCTGAACATGACTTGTTAATCTTAGCTTCAGATGGACTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGACATTGCTCGTTCTTTTCTCGTGGGGAGCAACAAATCACAACCATTGCTGGCTTGTAAAAAGCTTGTAGATTTGTCTGTTTCACGAGGCTCCATGGATGATACGAGCGTTATGCTAATCAAATTAGAACACTATGTTTAA 1161 0.5039 MSCSVAVSNSPVFSPSSSLFCSKPSIISSSPESLSLSLSHLKPSNTNTASSCSSPSAAAASSSPSSPFRLRLPKPPSVFSASSASSTSPNGTVLKRKRPARLDIPVSSLTFGVPPTPSAAARDVVEAEEDGFGVYCKRGRREYMEDRYTAGNNLRGENKLAFFGIFDGHGGAKAAEYAANNLEKNILDEVIMRDEDDAEEAVKRGYLNTDSDFLKEELHGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIESLGGYVDLCRGIWRIQGSLAVSRGIGDRHLKQWVTAEPETKVLRIEPEHDLLILASDGLWDKVSNQEAVDIARSFLVGSNKSQPLLACKKLVDLSVSRGSMDDTSVMLIKLEHYV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10186g00001 386 ProSiteProfiles PPM-type phosphatase domain profile. 131 382 IPR001932 -
Vium10186g00001 386 CDD PP2Cc 131 382 IPR001932 -
Vium10186g00001 386 FunFam probable protein phosphatase 2C 25 124 385 - -
Vium10186g00001 386 MobiDBLite consensus disorder prediction 36 99 - -
Vium10186g00001 386 Gene3D - 122 385 IPR036457 -
Vium10186g00001 386 PANTHER PROTEIN PHOSPHATASE 2C 71 380 IPR015655 GO:0004722|GO:0006470
Vium10186g00001 386 MobiDBLite consensus disorder prediction 78 93 - -
Vium10186g00001 386 SUPERFAMILY PP2C-like 132 383 IPR036457 -
Vium10186g00001 386 SMART PP2C_4 121 380 IPR001932 -
Vium10186g00001 386 MobiDBLite consensus disorder prediction 36 68 - -
Vium10186g00001 386 ProSitePatterns PPM-type phosphatase domain signature. 162 170 IPR000222 GO:0043169
Vium10186g00001 386 Pfam Protein phosphatase 2C 132 374 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10186g00001 Vium-Chr10186 7694 9928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10186g00001 1 386 PP2C-type Phosphatase Gene Family AT2G30020 63.930 2.73e-169 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10186g00001 K17506 - gmx:100797934 606.675