Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10182g00007 ATGTGGATGGTTGGTTACAACGAAGCTGCCGACTTCACCATGGCTGATTATGCACTCAATGGAAGAAAACTCAGGCCTCTCATGCCAAGGCCCGTGTCTTCTCCTAACAACACTCCCAACGCCAACTCTCCATGCTTGACCCGTATTCATCATGGCAACGATTTCTTCTCACAATATCATAATCTGGCATCAGTCGCAGATCAGGGCAAGAGAGAGTTCAACCCTCCACCCGTAGTGGTGAGTTCGAGGTGGAATCCGACCCCGGAGCAGCTGAGGGCATTGGAGGAATTGTACAGAAGAGGGACAAGAACACCGTCTGCGGAGCAAATCCAACAAATCACGGCACAGCTTCGAAGGTTTGGAAAAATTGAGGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCGAGGGAAAGACAGAAACGCCGCCGTCAAATGGAGTCAGCGGCTGAGGGTCATCACACCCGTGACTTTGATGGTACTCTTGAAAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACGCTTGCAAAGGAATCTGTTTCAATACAAAGAGCAGCAAAAGCAGCGGTTGCAGATTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAGTTACAGCACACAAGAAACTTAATGGAGAGGAATGCCACGTGGCATATGATGCAGCTATCTTGTCCTTCCCCTCCTACAGTTTCACCCCACTTCATAAACGCACCTCCCACCATATCTACTGCTAGCATGTCCACCACACCCTCAGTTACACCAAGAATAATGGACCCAAAGCTCATTAAGACTCATGATCTCAGCTTCTTTATTTCACCTAACAGAGAAAATGGTGTTATCCATTTAAGCAGTATCAACACCTACACCCCAGATGATAACTCTGTGGAGTCTCAAACCCTTCAACTTTTCCCGGTCAGGAATGGGGATGAAAGCAGTGATAACATTAACCACCAAAAGGAGACAGATGTATCAGTCTCAGCAATGAATGCTCCAAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1086 0.4669 MWMVGYNEAADFTMADYALNGRKLRPLMPRPVSSPNNTPNANSPCLTRIHHGNDFFSQYHNLASVADQGKREFNPPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHHTRDFDGTLEKKDLGASRTVFEVEQTKNWAPSTNCSTLAKESVSIQRAAKAAVADCRTDGWLQFDEGELQHTRNLMERNATWHMMQLSCPSPPTVSPHFINAPPTISTASMSTTPSVTPRIMDPKLIKTHDLSFFISPNRENGVIHLSSINTYTPDDNSVESQTLQLFPVRNGDESSDNINHQKETDVSVSAMNAPSQFFEFLPLKN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10182g00007 361 Gene3D - 80 142 - -
Vium10182g00007 361 SUPERFAMILY Homeodomain-like 82 148 IPR009057 -
Vium10182g00007 361 MobiDBLite consensus disorder prediction 143 161 - -
Vium10182g00007 361 CDD homeodomain 83 143 IPR001356 GO:0003677
Vium10182g00007 361 MobiDBLite consensus disorder prediction 140 161 - -
Vium10182g00007 361 SMART HOX_1 79 146 IPR001356 GO:0003677
Vium10182g00007 361 FunFam WUSCHEL-related homeobox 4 81 148 - -
Vium10182g00007 361 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Vium10182g00007 361 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Vium10182g00007 361 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 68 355 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10182g00007 Vium-Chr10182 38308 41318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10182g00007 1 361 Wox Gene Family AT3G18010 39.075 1.04e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium10182g00007 Homeodomain 9.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10182g00007 - - gmx:100777274 659.833