Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10180g00001 ATGGTGAACAGCAAGAGAAAGACCAGAAGGATAGTTATCCTTAACTGGTCCACCAGTTTCATGCTGTCTGTCTTCCTCTTCTGCTCATTGCTTTTCACTTCTAGTTTTAAGCATTGCTCAGCCACAGATGCTATAACCATTAACAAATTCTTGCAAGATGGGGGAGGGGATACTCTAATTTCAAAAGGAGTAAAGTTTGAGCTGGGATTTTTCACTCCTAATGGCAGCTCTAGTGGGAGAAGATATGTGGGCATATGGTACTACAAGTTTACTCCTTTAACAGTTGTGTGGGTTGCTAACCGAGACAAGCCGCTTCTAGATTCTTGGGGTGCTTTTGGCATTGGTGAAGATGGGAATCTAAAGGTTTTGGACAGAAGGGGGAAAGCCTGCTGGGGCACAAAACTTGAAGGATCAGCTTCACAACACAGAACATTGAAGATAATGGACAGTGGGAACCTTATTGTCAGTGATGAAGTTGGAGGCCAAGAGGATCATCAAGTGAAGATTCTGTGGCAGAGTTTTGCTAATCCAACAGATACATTCCTTCCTGGAATGAAAATGGATGGCAATTTAGCACTAACATCATGGAGAAGTTATGAAGACCCTGCAACAGGGAACTTCACTTTTGTGCATTGTCAAGGAGAGAATCAGTTCGTCATATGGAAGAGGTCCATCAAGTATTGGAAAAGCAGTGTTTCAAGTAGGTTTGCAGGAAGCGATGAGATGTCTCCAGCAATATCTTACTTGCTTTCAAATTTCACCCTGAGAGTATCCCCAAACGACACTGTTCCCTTTCTCACTTCAGCACTTTATCGTGACACAAGGTTGGTCATGACACACTGGGGTCAACTTAAGTACATGAAAATGGATTCAGAGAAAGTGTGGTTGTTGGTTTGGGTGGAGCCAAGAGATAGATGCAGTGTGTTCAATGCCTGTGGAAACTTTGGAAGCTGTAATAGCAAGTTTGACTCCATGTGCAAGTGTTTGCCTGGGTACAAGCCTAATTCAATTGAGAGTTGGAATGCTGGAGACTTTTCAGGTGGATGCAGCAGAAAAACAAATGTCTGCAGTGGGGATGCTACGAAAGCTACATTTTTGAGTTTGAAAATGATGAAAGTAGGGAACCCGGATGCTCAATTTAATGCCAATAATGAAGAGGAATGCAAATCAGAGTGTCTAAACAATTGCCAGTGCTATGCATATTCGTATCAAAGCGCCCAAAAGGATGCTGTTTGCTGGATTTGGTATGAGGACTTGAACAATCTTGAAGAAGAGTACGAGGATGGGTGTGACCTGCATGTTCGCGTGGCATTTTCTGATATAGAATCCACTGGGAACAGCTGTGGAACTTGTGGTACAAATTTCATTCCATATCCCCTAAGCACAGGACCAAGTTGTGGTGACCCAATGTACTTCAGTTTTCAATGCAACAACTCCTCTGGTGAGCTTGATTTTAAAATTCCAGGGGGAACTTATCAAGTGATTAGCATAAACCCAGACACACGAAAATTCTTGATCCACATAAAAGATGTACTTAACTGTGATCAGATTTCAAGGGATAAGTCTCTGTCTCTCAATCAGTCATTTCCATTTCACCTTACTGGCCATTGTCATGCTGATCCAAGCATTTTTAGTTCTAATGCTCCCATGAAACAAGGAGTAGAGATAGAACTCAGTTGGGAGCCCCCAACTGAGCCTATGTGCTCTTCGTTGTTGGACTGCAAGGATTGGCCAAATTCAACTTGCAACACTACCAGAGATGGCAAGAAGGGATGTCTTTGCAACACAAACTTTATTTGGGATGGATTGAAATTAAACTGCACTCTAGATGGCAATAATATCTATCAATCAGAAAGGCAACTGTCCTTACCAAAGATCATTGTAATAACTTTTACAACTGTGATTGGTTTAATTCTTCTGTCAACTACTGTTACATGTGTTTACTTGAGGAAGAGGAGACAGAGAAAACCACAAGATAGCAGGGGATATGTTCAGAAAAACTCAGGGATTAACTTGTATGACAGTGACAGATATGTCAGAGAATTAATTGAATCTGGTAGGTTCAAAGAAGAGGATGGGCAGGCCATAGATATTCCATTTTTCAATTTAGAAAGCATACTTGGAGCCACTAACAATTTTGCAAACGCTAACAAGCTTGGACAAGGAGGGTTTGGTCCTGTCTACAAGGGAAAATTTCCAGGAGGAAAAGAAATAGCGGTGAAGAGACTCTCAAGTTGTTCTGGACAAGGTTTAGAAGAATTTAAAAACGAAGTTGTGTTGATTGCAAAGCTTCAACATAGAAACCTGGTGAGACTTCTGGGGTACTGTGTGGAAGGAGATGAAAAGATGCTGGTATATGAATATATGCCAAATAGAAGCTTGGATGCTTTCATTTTTGACCAGAAGCTGTGTGTTCAATTAGACTGGGATATGCGCTTCAAGATTATTCTGGGGATTGCTCGAGGGCTCCTTTACTTGCATGAAGATTCTAGGTTGAGGATTATTCATAGGGACTTGAAAACAAGTAACATTCTACTAGATGAAGAGAAGAATCCTAAAATCTCAGACTTTGGCTTAGCCAGAATATTTGGAGGAACAGAGACAGTAGCTAACACAGATAGAGTGGTTGGAACATAA 2637 0.4133 MVNSKRKTRRIVILNWSTSFMLSVFLFCSLLFTSSFKHCSATDAITINKFLQDGGGDTLISKGVKFELGFFTPNGSSSGRRYVGIWYYKFTPLTVVWVANRDKPLLDSWGAFGIGEDGNLKVLDRRGKACWGTKLEGSASQHRTLKIMDSGNLIVSDEVGGQEDHQVKILWQSFANPTDTFLPGMKMDGNLALTSWRSYEDPATGNFTFVHCQGENQFVIWKRSIKYWKSSVSSRFAGSDEMSPAISYLLSNFTLRVSPNDTVPFLTSALYRDTRLVMTHWGQLKYMKMDSEKVWLLVWVEPRDRCSVFNACGNFGSCNSKFDSMCKCLPGYKPNSIESWNAGDFSGGCSRKTNVCSGDATKATFLSLKMMKVGNPDAQFNANNEEECKSECLNNCQCYAYSYQSAQKDAVCWIWYEDLNNLEEEYEDGCDLHVRVAFSDIESTGNSCGTCGTNFIPYPLSTGPSCGDPMYFSFQCNNSSGELDFKIPGGTYQVISINPDTRKFLIHIKDVLNCDQISRDKSLSLNQSFPFHLTGHCHADPSIFSSNAPMKQGVEIELSWEPPTEPMCSSLLDCKDWPNSTCNTTRDGKKGCLCNTNFIWDGLKLNCTLDGNNIYQSERQLSLPKIIVITFTTVIGLILLSTTVTCVYLRKRRQRKPQDSRGYVQKNSGINLYDSDRYVRELIESGRFKEEDGQAIDIPFFNLESILGATNNFANANKLGQGGFGPVYKGKFPGGKEIAVKRLSSCSGQGLEEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKMLVYEYMPNRSLDAFIFDQKLCVQLDWDMRFKIILGIARGLLYLHEDSRLRIIHRDLKTSNILLDEEKNPKISDFGLARIFGGTETVANTDRVVGT 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10180g00001 878 SMART blect_4 50 177 IPR001480 -
Vium10180g00001 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 834 846 IPR008271 GO:0004672|GO:0006468
Vium10180g00001 878 ProSiteProfiles Bulb-type lectin domain profile. 44 168 IPR001480 -
Vium10180g00001 878 Pfam PAN-like domain 361 421 IPR003609 -
Vium10180g00001 878 Pfam Protein kinase domain 715 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10180g00001 878 SUPERFAMILY Protein kinase-like (PK-like) 697 878 IPR011009 -
Vium10180g00001 878 CDD PAN_AP_plant 356 437 - -
Vium10180g00001 878 CDD B_lectin 54 177 IPR001480 -
Vium10180g00001 878 Gene3D Transferase(Phosphotransferase) domain 1 789 878 - -
Vium10180g00001 878 PIRSF SRK 15 457 IPR024171 GO:0004674
Vium10180g00001 878 PIRSF SRK 567 878 IPR024171 GO:0004674
Vium10180g00001 878 Pfam D-mannose binding lectin 94 191 IPR001480 -
Vium10180g00001 878 ProSiteProfiles EGF-like domain profile. 302 338 IPR000742 -
Vium10180g00001 878 Gene3D Phosphorylase Kinase; domain 1 680 788 - -
Vium10180g00001 878 Gene3D - 37 176 IPR036426 -
Vium10180g00001 878 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 678 788 - -
Vium10180g00001 878 ProSiteProfiles PAN/Apple domain profile. 356 430 IPR003609 -
Vium10180g00001 878 SMART ntp_6 360 436 IPR003609 -
Vium10180g00001 878 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 789 878 - -
Vium10180g00001 878 Pfam S-locus glycoprotein domain 233 335 IPR000858 GO:0048544
Vium10180g00001 878 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 25 438 - -
Vium10180g00001 878 SUPERFAMILY alpha-D-mannose-specific plant lectins 95 201 IPR036426 -
Vium10180g00001 878 ProSiteProfiles Protein kinase domain profile. 713 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10180g00001 878 SMART serkin_6 713 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10180g00001 Vium-Chr10180 4886 9284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10180g00001 683 878 Receptor kinase-like Gene Family AT4G04570 60.714 4.77e-73 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium10180g00001 Pkinase 2.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10180g00001 - - var:108339799 1772.29