Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1017g00001 ATGGGAGACTTATGGTTGGGTTCATTGACCATTTTTTTGACCATTATGGGTTCACAGGGCCAGCTCAAAACCGGGTTTTACTCCTCTTCCTGCCCAAACGCAGAGGCCACGGTTCGGTCCACTGTTCAATCCTACTTCAGTAAAGATCCTACCATTGCTCCTGCCCTTCTCAGGCTTCACTTTCATGATTGCTTTGTTCAGGGCTGCGATGGTTCAGTTTTGATTGCAGGCTCTTCTGCAGAGAGGAATGCGTTACCTAACGCTGGTCTAAGAGGTTTTGAAGTGATTGAGGATGCAAAATCACAACTTGAGGCCAAGTGTCCTGGTGTTGTCTCATGTGCTGACATACTAGCATTGGCAGCACGTGATGCTGTAGACTTGAGTGATGGTCCAAGTTGGTCAGTAGCTACAGGAAGAAGAGATGGGAGGGTTTCTTTATCATCTCAAGCTTCAAACTTGCCATCTCCACTTGACCCTATTTCTGTGCAAAGGAAAAAGTTTTCTGACAAAGGCCTAGATGATCATGACCTTGTAACCCTTGTTGGGGCACATACCATAGGTCAAACTGAATGCAGATTCTTCAGCTACCGTTTGTATAATTTCACCACCACTGGGAATTCAGATCCAACTATAGACCAAGATTTCTTAGGCCAACTTAAAGCACTGTGTCCAAATAAAGGAGATGGCTTGAAAAGGGTGTCGTTGGACATAGATAGTCCGACCAAATTTGATGTTAGTTTCTTCAAAAATGTGCGCGATGGTAATGCAATTCTAGAGTCAGATCAGAGGCTGTGGGGAGACCCTGCTACACAAAGTATAGTGCAGAATTATGCAGGGAATATAAGAGGGTTATTGGGGTTACGATTTAATTACGAATTTCCAAAGGCTATGGTTAAACTGAGTAGTGTAGAGGTGAAGACTGGTACTCAAGGAGAGATTAGAAAGGTCTGCTCAAAAGTTAATTTATATTAA 972 0.4352 MGDLWLGSLTIFLTIMGSQGQLKTGFYSSSCPNAEATVRSTVQSYFSKDPTIAPALLRLHFHDCFVQGCDGSVLIAGSSAERNALPNAGLRGFEVIEDAKSQLEAKCPGVVSCADILALAARDAVDLSDGPSWSVATGRRDGRVSLSSQASNLPSPLDPISVQRKKFSDKGLDDHDLVTLVGAHTIGQTECRFFSYRLYNFTTTGNSDPTIDQDFLGQLKALCPNKGDGLKRVSLDIDSPTKFDVSFFKNVRDGNAILESDQRLWGDPATQSIVQNYAGNIRGLLGLRFNYEFPKAMVKLSSVEVKTGTQGEIRKVCSKVNLY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1017g00001 323 Gene3D Peroxidase, domain 2 154 300 - -
Vium1017g00001 323 FunFam Peroxidase 25 166 - -
Vium1017g00001 323 SUPERFAMILY Heme-dependent peroxidases 21 321 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Plant peroxidase signature 129 144 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Plant peroxidase signature 175 187 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Plant peroxidase signature 110 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Plant peroxidase signature 91 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PANTHER PEROXIDASE 25-RELATED 14 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 ProSiteProfiles Plant heme peroxidase family profile. 21 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 176 186 IPR019793 -
Vium1017g00001 323 Pfam Peroxidase 38 279 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Haem peroxidase superfamily signature 129 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Haem peroxidase superfamily signature 111 128 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1017g00001 323 Gene3D - 25 321 - -
Vium1017g00001 323 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Vium1017g00001 323 FunFam Peroxidase 154 300 - -
Vium1017g00001 323 CDD secretory_peroxidase 21 320 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1017g00001 Vium-Chr1017 562 1977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1017g00001 9 321 Peroxidase AT2G41480 70.886 1.46e-172 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1017g00001 K00430 - gmx:100806700 580.867