Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10178g00003 ATGCCTGCCCATCCTTCCTCCCTTTCTCCCTCCCTCGCTTTCATCTTCCTTTCTCTTCTTCCTCTTTCCCTCGCCAACACTGATCCTACTGATGTTCAAGCTCTCGAGGTTATGTACAATGCGTTGAATAGTTCAACTCAGTTAACGGGTTGGAGAATCGGTGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGGTCATTTGTGAAGGTTCAGCCGTTGTTTCCATTGAGCTCTCAGGATTAGGACTCGATGGGACTCTGGGGTACCTGCTTTCGGACCTTATGTCACTCAGAAAGCTTGACTTGAGTGACAACAAGATCCATGATACAATTCCCTACCAGTTGCCGCCAAATCTTACAAGCCTGAATCTTGCAAGAAACAATTTATCTGGAAATCTTCCTTATTCCTTTTCTGCTATGGGTTCTCTCAATTATTTGAATTTAAGCAATAATGCACTGTCCATGGCAGTTGGCGATGTTTTTGCTAATCTTTCAGATCTAGATATCCTGGATCTATCATTCAATAACTTCTCGGGGGATCTTCCTCCTTCATTTGGTTCACTGGCCAATCTTTCTTCCCTTTTCTTGCAGAAAAACCAGTTGACTGGTTCTCTTAGTGTTCTCGTCGGTTTGCCTTTGGATACTTTAAATGTTGCGAACAATAATTTCAGTGGATGGCTACCTCGTGAAATTACTTCCATACGTCTTTTCATATATGATGGAAATTCATTTGAGAACACTCCTGCTCCTCTTCCACCAGCAGTAACTTCTCCTCCTCCCAGTGGATCCCGTAATCATCATCATTCTGGATCTGGCTCACATAATAAAACACAAGCCTCTGATAATGAAAATTCTGATGGTCACACGGGTTTGAAAGTGGGGGCTGTTGTCGGCATTGTGTTAGGTTCCATAGTGGTGGCTGCCATTGTGCTGCTTGCTTTTATTTTCTGCATCCAAAAGCAAAAGGGGAAGAAAAAGGGTGCAAGGAATTTTAGTGGGAGCCTTCCTCGTGGAGTTATTAATGTTACTCCTCAGATGCAAGAGCAGAGGGTAAAGAGTTCTAATGTTGTTACAGACCTGAAGCCTCGCCCAGCAGAAAATGTATCAGTTGAGAGATTACCTACTAAAAGTGGATCAGTACGGCATATGAAGTCCCCTATAACTTCAACATCGTACACCATTGCTTCTCTCCAAAGTGCTACAAATAGCTTTAGTCAAGAATTTATAATCGGTGAAGGTTCTCTTGGCCGTGTTTACAAGGCTGATTTCCCAAATGGGAAGGAAATGGCTATCAAGAAGATCGACAACTCTGCACTGTCATTACAGGAGGAAGACAATTTTCTTGAAGCTGTTTCAAATATGTCGCGCCTGCGGCACCCGAACATTGTGACATTGACTGGATATTGTGCTGAACATGGCCAACGACTTCTAGTTTATGAGTATATAGGAAATGGAAATCTGCATGACATGCTCCATTTTGCTGAAGAAAACAGTGGCAAGGCTTTGTCTTGGAATTCTCGTGTTCGCATAGCACTTGGCACAGCCCGGGCATTAGAGTACTTGCATGAAGTGTGTTTGCCCTCTGTTGTGCATAGAAATTTCAAATCAGCAAATATATTACTTGATGAGGAGCTAAATCCTCACCTGTCTGACTGTGGTTTAGCTGCTTTGACACCAAACACAGAGCGGCAGGTATCGACTCAGATGGTCGGTTCATTTGGTTACAGTGCTCCTGAGTTTGCATTATCAGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGGTTATGCTGGAATTGTTGACAGGTCGGAAGCCGCTAGACAGTTCACGAATTCGATCAGAGCAGTCACTTGTGAGGTGGGCTACACCCCAACTCCATGATATAGATGCCTTGGCAAAAATGGTGGATCCTACTTTGAATGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGCCGGAACCTGAATTTCGACCTCCAATGTCTGAGGTGGTGCAAGCGTTAGTCCGACTAGTGCAAAGAGCAAGTGTGGTTAAAAGACGACCCAGTGACGAATCTGGCATTGGTCACAAGACCCCAGAACATGAGGCCATAGACATGTCATTTTAA 2142 0.4412 MPAHPSSLSPSLAFIFLSLLPLSLANTDPTDVQALEVMYNALNSSTQLTGWRIGGGDPCGESWKGVICEGSAVVSIELSGLGLDGTLGYLLSDLMSLRKLDLSDNKIHDTIPYQLPPNLTSLNLARNNLSGNLPYSFSAMGSLNYLNLSNNALSMAVGDVFANLSDLDILDLSFNNFSGDLPPSFGSLANLSSLFLQKNQLTGSLSVLVGLPLDTLNVANNNFSGWLPREITSIRLFIYDGNSFENTPAPLPPAVTSPPPSGSRNHHHSGSGSHNKTQASDNENSDGHTGLKVGAVVGIVLGSIVVAAIVLLAFIFCIQKQKGKKKGARNFSGSLPRGVINVTPQMQEQRVKSSNVVTDLKPRPAENVSVERLPTKSGSVRHMKSPITSTSYTIASLQSATNSFSQEFIIGEGSLGRVYKADFPNGKEMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLTGYCAEHGQRLLVYEYIGNGNLHDMLHFAEENSGKALSWNSRVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRIRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGIGHKTPEHEAIDMSF 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10178g00003 713 SUPERFAMILY Protein kinase-like (PK-like) 379 679 IPR011009 -
Vium10178g00003 713 ProSiteProfiles Protein kinase domain profile. 404 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10178g00003 713 CDD STKc_IRAK 410 682 - -
Vium10178g00003 713 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
Vium10178g00003 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 369 481 - -
Vium10178g00003 713 Gene3D Transferase(Phosphotransferase) domain 1 482 701 - -
Vium10178g00003 713 Gene3D Ribonuclease Inhibitor 28 278 IPR032675 -
Vium10178g00003 713 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Vium10178g00003 713 Pfam Protein kinase domain 407 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10178g00003 713 SUPERFAMILY L domain-like 31 237 - -
Vium10178g00003 713 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Vium10178g00003 713 MobiDBLite consensus disorder prediction 260 286 - -
Vium10178g00003 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 482 693 - -
Vium10178g00003 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 683 IPR046959 -
Vium10178g00003 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
Vium10178g00003 713 MobiDBLite consensus disorder prediction 249 286 - -
Vium10178g00003 713 SMART LRR_typ_2 164 187 IPR003591 -
Vium10178g00003 713 SMART LRR_typ_2 140 163 IPR003591 -
Vium10178g00003 713 SMART LRR_typ_2 188 211 IPR003591 -
Vium10178g00003 713 SMART LRR_typ_2 94 122 IPR003591 -
Vium10178g00003 713 MobiDBLite consensus disorder prediction 693 713 - -
Vium10178g00003 713 Gene3D Phosphorylase Kinase; domain 1 366 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10178g00003 Vium-Chr10178 10080 16970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10178g00003 140 713 Strubbelig Receptor Gene Family AT4G22130 69.217 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vium10178g00003 Pkinase 1.1e-44 CL0016