Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10173g00002 ATGTCTTCAACCGTTGGCCAGACGATCAAGTGCAAAGCTGCCATTGCATGGGAGGCAGGAAAGCCACTGGTGATCGAAGAAGTAGAGGTGGCGCCACCCCAAGCCGGGGAAGTCCGTTTGAAGATCCTCTACACCTCCCTTTGCCACACTGATGTTTACTTTTGGGAAGCCAAGGGCCAGACTCCATTGTTTCCTCGTATTTTTGGCCATGAAGCTTCAGGTGTTGTTGAGAGCGTTGGCGAGGGTGTCACTCATTTGCAACCAGGAGACCATGCCCTCCCTGTGTTCACAGGAGAGTGTGGGGAATGCGTACATTGTAAATCAGAAGAAAGCAACATGTGTGAGCTCCTCCGGATCAACACCGATAGGGGTGTAATGATCAATGATGGTAAATCAAGGTTCTCTAAGGATGGAAAACCCATACACCATTTCTTGGGAACCTCCACATTCAGTGAATACACAGTTCTCCATGCAGGATGTGTTGCAAAGATCAACCCAGCTGCTCCACTTGACAAAGTTTGTGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGTGCTACTGTTAATGTTGCAAAACCAAAACCTGGTTCCTCTGTTGCCATTTTCGGACTTGGAGCCGTTGGCCTTGCGGCTGCAGAAGGGGCTAGGATTTCCGGTGCTAAAAGAATCATTGGAATTGATTTAGTTTCAGATAGATTTGAAGAAGCTAAGAAGTTTGGTGTTAACGAGTTTGTGAATCCAAAGGATCATGATAAACCTATTCAACAGGTAATTGCTGAAATGACCAATGGAGGTGTGGACCGGGCTGTGGAATGTACTGGCAGCATCCAGGCCATGGTTTCTGCATTTGAATGTGTCCATGATGGTTGGGGTGTTGCTGTACTTGTTGGTGTGCCTAGTAAAGATGATGCATTCAAAACTGCTCCTATTAATTTCCTGAATGAGAGGACTCTTAAAGGAACCTTTTATGGTAACTACAAACCACGCACTGACCTTCCTGGTGTTGTGGAGAAGTACCTGAGCGGGGAGCTAGAAGTAGATAAGTTCATCACTCACTCAGTTTCCTTCTCAGAGATCAACAAAGCCTTTGAATACATGCTGAAAGGACAGTCCATTAGGTGTCTTATTCGCATGCAAGACTGA 1143 0.4628 MSSTVGQTIKCKAAIAWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEASGVVESVGEGVTHLQPGDHALPVFTGECGECVHCKSEESNMCELLRINTDRGVMINDGKSRFSKDGKPIHHFLGTSTFSEYTVLHAGCVAKINPAAPLDKVCVLSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGAKRIIGIDLVSDRFEEAKKFGVNEFVNPKDHDKPIQQVIAEMTNGGVDRAVECTGSIQAMVSAFECVHDGWGVAVLVGVPSKDDAFKTAPINFLNERTLKGTFYGNYKPRTDLPGVVEKYLSGELEVDKFITHSVSFSEINKAFEYMLKGQSIRCLIRMQD 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10173g00002 380 SMART PKS_ER_names_mod 20 376 IPR020843 GO:0016491
Vium10173g00002 380 SUPERFAMILY GroES-like 329 377 IPR011032 -
Vium10173g00002 380 FunFam alcohol dehydrogenase 1-like isoform X1 19 182 - -
Vium10173g00002 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Vium10173g00002 380 SUPERFAMILY GroES-like 4 187 IPR011032 -
Vium10173g00002 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Vium10173g00002 380 FunFam Alcohol dehydrogenase class-P 183 321 - -
Vium10173g00002 380 CDD alcohol_DH_plants 9 377 - -
Vium10173g00002 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
Vium10173g00002 380 Gene3D - 183 321 - -
Vium10173g00002 380 Pfam Zinc-binding dehydrogenase 206 331 IPR013149 -
Vium10173g00002 380 Gene3D - 19 370 - -
Vium10173g00002 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10173g00002 Vium-Chr10173 5037 7795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10173g00002 37 327 Monolignol Biosynthesis Gene Families AT1G72680 25.939 1.39e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10173g00002 K18857 - gmx:100800668 717.227