Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10172g00002 ATGATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTTCTCTAGCAGTTTATAATTTGATTGCTGATGATTTTGATAGTTCATGTTTTCTTCATAATGTAAGAGAAGAATCAAATAAACATGGGTTAAAACACCTCCAGACCGTCCTTCTTTCAGAAATACTTGGGGAGAAGGACATCAACTTAGCAAGTGTGCAAAGAGGAATTTCAGTGATACAGCAAAGACTTCGTAGAAAGAAAGTTCTCTTGATTCTAGATGATGTTGACAACAGAAAGCAGTTACAAGCATTTGCTGGAAGATCTGATTGGTTTGGTCCCGGCAGCAGGGTTATCATTACCACTCGAGACAAACAGCTGCTAAAATCTCATGAGATTGAAAGAACTTATGTGGTGAAGGAATTGAATAAGAATGATTCTCTTCAATTGCTTGTATGGAATGCTTTCAAAAGGGAAAAAGTTGATCCAAGATACGAGGACGTGTTGAAACGTGTAGTAACTTATGCTTCTGGTCTTCCATTGGCTATAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTAGAAGAATGGGAGTCTGCGATTGAACATTACAAAAGAATTCCTAACGGTCAAATTCTAGAGATACTTAAAGTAAGTTTTGATGCTTTGGGGAAAGAAGAAAAATATGTCTTTCTTGACATCGCCTGTTGCTTCAAAGGAAGTAGTTTGAAAGAAGTTGAACGTATACTTGGTGTTCTTTATGATAACAACATGAAACATCATATTGGAGTGTTGGTGGAAAAATCTCTCATAAAGGTTGGGCGTGGATGGTTTGATGTAATTGAAATGCACGACTTGATTGAGGACATGGGTAGACAAATTGACCTGCAAAAGTCGCCCACAGAGCCAGGGAAGCGCAGGAGATTATGGTTAGGGAAAGATATCATTCATGTGTTAAAAGACAACAAGGTAAGTAAGCTTCTTCGACCACTGATATGCTTTCTTAACTTGATTTAA 1002 0.3792 MIGIHGMGGLGKTTLSLAVYNLIADDFDSSCFLHNVREESNKHGLKHLQTVLLSEILGEKDINLASVQRGISVIQQRLRRKKVLLILDDVDNRKQLQAFAGRSDWFGPGSRVIITTRDKQLLKSHEIERTYVVKELNKNDSLQLLVWNAFKREKVDPRYEDVLKRVVTYASGLPLAIEVIGSNLVGKSVEEWESAIEHYKRIPNGQILEILKVSFDALGKEEKYVFLDIACCFKGSSLKEVERILGVLYDNNMKHHIGVLVEKSLIKVGRGWFDVIEMHDLIEDMGRQIDLQKSPTEPGKRRRLWLGKDIIHVLKDNKVSKLLRPLICFLNLI 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10172g00002 333 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 315 IPR044974 GO:0006952
Vium10172g00002 333 PRINTS Disease resistance protein signature 1 15 - -
Vium10172g00002 333 PRINTS Disease resistance protein signature 77 91 - -
Vium10172g00002 333 PRINTS Disease resistance protein signature 170 184 - -
Vium10172g00002 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 229 IPR027417 -
Vium10172g00002 333 Gene3D - 1 132 IPR027417 -
Vium10172g00002 333 Gene3D - 135 219 IPR042197 -
Vium10172g00002 333 Pfam NB-ARC domain 2 201 IPR002182 GO:0043531
Vium10172g00002 333 SUPERFAMILY "Winged helix" DNA-binding domain 206 315 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10172g00002 Vium-Chr10172 11914 13535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10172g00002 2 316 WRKY Transcription Factor Family AT5G45050 34.277 7.35e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10172g00002 - - vum:124819448 661.373