Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10172g00001 ATGGCAACTCCAAGTTTCCGTAGATTCACATACGATGTGTTCCTCAGCTTTAGAGGGGAAGACACTCGTTATGGTTTCACTGGTAATCTCTACAAAGCTCTCTGTGACAGGGGACTTCACACTTTCATGGATGATGACAAACTTCAAAGCGGAGAGGAAATCACACCAGCACTTCAGAAAGCAATTGAAGAGTCTAGGATTGCCATCATTGTGCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGCAACCATCCTTCACTGCCAGAGTAAAGGGTTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTCTAATGTCAGACATCAGAAAGATAGCTATCAAGAAGCATTGGCTAAGCATCAAAAGAGGTTCAAAGGGCAGAAGGAGAAGTTACATAAATGGAAGATGGCCCTGCATCAAGTTGCTGACTTCTCTGGCTATCATTTCAAAGATGGGTACCCACCTTACCAATCTTTTTATTTTATTGAAAATTATAATGTTTGGAACAGGGATGCATACCAGTACGAGTTTATTGGGAGAATTGTTGAACGGGTTTCTAGGGTGATTAATCATGCTCGTTTACATGTTGCGGATTACCCAGTTGGCCTACTGTCACAGGTGCTGAAAGTCAAGAAACTTTTGGATGTTGGATCGGATGATGTTGTCCACATGATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTTCTCTAGCAGTTTATAATTTGATTGCTGATGATTTTGATAGTTCATGTTTTCTTCATAATGTAAGAGAAGAATCAAATAAACATGGGTTAAAACACCTCCAGACCGTCCTTCTTTCTGAACTACTTGGAGAGAAGGACATCAACTTAGCAAGTGTGCAAAGAGGAATTTCAGTGATACAACAAAGGCTTGGTAGAAAGAAAGTTCTCTTGATTCTAGACGATGTTGACAACAGAAAGCAGTTACAGGCATTTGCTGGAAGATCTGATTGGTTTGCTCCTGGCAGCAGAGTTATCGTTACCACTCGGGACGAACAGCTGCTAAAATGTCATGAGATTGAAAGAACTTATGAGGTGAAGGAATTGAATAAGAATGATTCTCTTCAATTGCTTATATGGAATGCTTTCAAAAGGGAAAAGGTCGATCCAAGTTACAAGGACGTGTTGAAACGTGTAGTGACTTATGCTTCTGGTCTTCCATTGGCTTTAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTAGAAGAATGGGAGTCTGCGATTGAACATTACAAAAGAATTCCAAACGGTGAAATTATAGAGATACTTAAAGTAAGCTTTGATGCTTTGGGGGAAGAAGAAAAGAATGTCTTTCTTGACATCGCCTGTTGCTTGAAAGGAAGTAGTTTGAAAGAAGTTGAACAAATACTTGGTGTTCTTTATGATAACAACATGAAACATCACATTGGGGTGTTGGTGAAAAAATCTCTCATAAAGGTTGGGCGTGAAAGGTTTAATGTAATTGAAATGCACGACTTGATTGAGGACATGGGTAGACAAATTGACCTGCAAAAGTCACCCAAAGAGGTAGGGAAGCGCAGGAGATTATGGTTAGGGAAAGATATCATTCATGTTTTAAAAGACAACAAGGGAACTAGCGAAACTGAAATCATATGCCTGGATTTGTCTATATCTGAAAAAGAAGAAACGATAGAATGGAATGCCAACGCCTTCAGAAGGATGAAAAACCTTAAAATACTTATCATTAGAAATGGTAAATTTTTCAAAGGTCCCAATTATTTTCCGGAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTTGATCCGAACAAGCTTGTGACATGCAAGTTACCTCACAGTTATTTTACGTCATTTGGATTCCTTGGCTCATCAAAGAAGTTCGAGAATCTAACGGTCTTGAATTTTGACCGGTGCAAATTTTTAACACAGACACCCGATATGTCTGATCTCGGAAATTTAGAGGAAGTTTCATTTAAAGATTGTGAGAGTTTAGTTGAAGTTCACGACTCAGTTGGTTTTATGAGTAAACTTAAAATATTGAATGCGGAAGGTTGCATCAAGCTTATGAGTTTTCCACCTCTCAACTTGCCCACTCTTGAAAGACTAGAACTTTCATNGGATGCATACCAGTACGAGTTTATTGGGAGAATTGTTGAACGGGTTTCTAGGGTGATTAATCATGCTCGTTTACATGTTGCGGATTACCCAGTTGGCCTACTGTCACAGGTGCTGAAAGTCAAGAAACTTTTGGATGTTGGATCGGATGATGTTGTCCACATGATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTTCTCTAGCAGTTTATAATTTGATTGCTGATGATTTTGATAGTTCATGTTTTCTTCATAATGTAAGAGAAGAATCAAATAAACATGGGTTAAAACACCTCCAGACCGTCCTTCTTTCAGAAATACTTGGGGAGAAGGACATCAACTTAGCAAGTGTGCAAAGAGGAATTTCAGTGATACAGCAAAGACTTCGTAGAAAGAAAGTTCTCTTGATTCTAGATGATGTTGACAACAGAAAGCAGTTACAAGCATTTGCTGGAAGATCTGATTGGTTTGGTCCCGGCAGCAGGGTTATCATTACCACTCGAGACAAACAGCTGCTAAAATCTCATGAGATTGAAAGAACTTATGTGGTGAAGGAATTGAATAAGAATGATTCTCTTCAATTGCTTGTATGGAATGCTTTCAAAAGGGAAAAAGTTGATCCAAGATACGAGGACGTGTTGAAACGTGTAGTAACTTATGCTTCTGGTCTTCCATTGGCTATAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTAGAAGAATGGGAGTCTGCGATTGAACATTACAAAAGAATTCCTAACGGTCAAATTCTAGAGATACTTAAAGTAAGTTTTGATGCTTTGGGGAAAGAAGAAAAATATGTCTTTCTTGACATCGCCTGTTGCTTCAAAGGAAGTAGTTTGAAAGAAGTTGAACGTATACTTGGTGTTCTTTATGATAACAACATGAAACATCATATTGGAGTGTTGGTGGAAAAATCTCTCATAAAGGTTGGGCGTGGATGGTTTGATGTAATTGAAATGCACGACTTGATTGAGGACATGGGTAGACAAATTGACCTGCAAAAGTCGCCCACAGAGCCAGGGAAGCGCAGGAGATTATGGTTAGGGAAAGATATCATTCATGTGTTAAAAGACAACAAGGGAACTAGAGAAACTGAAATCATATGCCTGGATTTGTCTATATCTGAGAAAGAAGAGACGCTAGAATGGAATACCAACGCCTTCATAAGGATGAAAAACCTTAAAATACTGATCATTAGAAATGTCTCTTTATTTTCTTTGCAGAAGTTCGAAAATCTAACTGTCTTGAATTTTGACTGGTGCATATTTTTAACACAGACACCCGATATGTCTGATCTCGGAAATTTGGAGGAAGTTTCATTTAAAGGCTGTGAGAGTTTAGTTGAAGTTCACGACTCAGTTGGTTTTATGAATAAACTGAAAATATTGAATGCGGAAGGATGCATCAAGCTTATGAGTTTTCCACCTCTCAACTTGCCTACTCTTGAAAGACTAGAACTTTCATTTTGTTTCAGTCTTGAGAAATTTCCAGAAATACTAGGAAAGATGGGAAACATAAGGGTACTTCAATTGCAAGATCTTCCCATTAAAGAATTGCCACTGTCGTTTCAAAATCTTGATGGACTCGAAGAGTTATCCTTGTCATGTGAAAATGTTCACTTTTCAAGTAGCATTGCCACGATGCCTAAATTGTTTCGTTTTAGTGTTACTAATTGCAGGGGGTGGCAATGGGTAAAATCAGAAGATGCTGAAGATAACTTTGGCTCAATGGTTCCTTCAAAGGTAGAATGGTTTGCCGCCTGGTCTTGCAACCTGGATGATGATTTCTTTTCAGGAGGTTTGATGCGGTTGGCACATGTGCGTTGTTTATTTCTACGGGACAATAATTTCAAACACCTTCCTGAATGCATCAAAGAATTTCACAACCTCTGGGCTCTTGATGTGAGTCATTGCAAACATCTTGAGGAAATCAGAGGGTTTCCACCAAAATTAGAACATTTCAAGGCAATAAACTGTATATCCTTGACTTCCTCCAGCTTAAGCATGTTGCTAAATAAGGTTTTATCTTGCTTTTGA 4242 0.3873 MATPSFRRFTYDVFLSFRGEDTRYGFTGNLYKALCDRGLHTFMDDDKLQSGEEITPALQKAIEESRIAIIVLSHNYASSSFCLDELATILHCQSKGLLVIPVFYKVDPSNVRHQKDSYQEALAKHQKRFKGQKEKLHKWKMALHQVADFSGYHFKDGYPPYQSFYFIENYNVWNRDAYQYEFIGRIVERVSRVINHARLHVADYPVGLLSQVLKVKKLLDVGSDDVVHMIGIHGMGGLGKTTLSLAVYNLIADDFDSSCFLHNVREESNKHGLKHLQTVLLSELLGEKDINLASVQRGISVIQQRLGRKKVLLILDDVDNRKQLQAFAGRSDWFAPGSRVIVTTRDEQLLKCHEIERTYEVKELNKNDSLQLLIWNAFKREKVDPSYKDVLKRVVTYASGLPLALEVIGSNLVGKSVEEWESAIEHYKRIPNGEIIEILKVSFDALGEEEKNVFLDIACCLKGSSLKEVEQILGVLYDNNMKHHIGVLVKKSLIKVGRERFNVIEMHDLIEDMGRQIDLQKSPKEVGKRRRLWLGKDIIHVLKDNKGTSETEIICLDLSISEKEETIEWNANAFRRMKNLKILIIRNGKFFKGPNYFPESLRVLEWHGYPSNCLPSNFDPNKLVTCKLPHSYFTSFGFLGSSKKFENLTVLNFDRCKFLTQTPDMSDLGNLEEVSFKDCESLVEVHDSVGFMSKLKILNAEGCIKLMSFPPLNLPTLERLELSXDAYQYEFIGRIVERVSRVINHARLHVADYPVGLLSQVLKVKKLLDVGSDDVVHMIGIHGMGGLGKTTLSLAVYNLIADDFDSSCFLHNVREESNKHGLKHLQTVLLSEILGEKDINLASVQRGISVIQQRLRRKKVLLILDDVDNRKQLQAFAGRSDWFGPGSRVIITTRDKQLLKSHEIERTYVVKELNKNDSLQLLVWNAFKREKVDPRYEDVLKRVVTYASGLPLAIEVIGSNLVGKSVEEWESAIEHYKRIPNGQILEILKVSFDALGKEEKYVFLDIACCFKGSSLKEVERILGVLYDNNMKHHIGVLVEKSLIKVGRGWFDVIEMHDLIEDMGRQIDLQKSPTEPGKRRRLWLGKDIIHVLKDNKGTRETEIICLDLSISEKEETLEWNTNAFIRMKNLKILIIRNVSLFSLQKFENLTVLNFDWCIFLTQTPDMSDLGNLEEVSFKGCESLVEVHDSVGFMNKLKILNAEGCIKLMSFPPLNLPTLERLELSFCFSLEKFPEILGKMGNIRVLQLQDLPIKELPLSFQNLDGLEELSLSCENVHFSSSIATMPKLFRFSVTNCRGWQWVKSEDAEDNFGSMVPSKVEWFAAWSCNLDDDFFSGGLMRLAHVRCLFLRDNNFKHLPECIKEFHNLWALDVSHCKHLEEIRGFPPKLEHFKAINCISLTSSSLSMLLNKVLSCF 1413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10172g00001 1413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 1006 IPR027417 -
Vium10172g00001 1413 Gene3D Ribonuclease Inhibitor 1226 1412 IPR032675 -
Vium10172g00001 1413 Gene3D - 363 447 IPR042197 -
Vium10172g00001 1413 Gene3D - 912 996 IPR042197 -
Vium10172g00001 1413 Pfam NB-ARC domain 213 430 IPR002182 GO:0043531
Vium10172g00001 1413 Pfam NB-ARC domain 762 978 IPR002182 GO:0043531
Vium10172g00001 1413 Gene3D Ribonuclease Inhibitor 515 741 IPR032675 -
Vium10172g00001 1413 SUPERFAMILY L domain-like 568 723 - -
Vium10172g00001 1413 SUPERFAMILY L domain-like 1053 1406 - -
Vium10172g00001 1413 SMART till_3 10 149 IPR000157 GO:0007165
Vium10172g00001 1413 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 163 - -
Vium10172g00001 1413 Gene3D Ribonuclease Inhibitor 1088 1225 IPR032675 -
Vium10172g00001 1413 SUPERFAMILY "Winged helix" DNA-binding domain 434 543 IPR036390 -
Vium10172g00001 1413 PRINTS Disease resistance protein signature 1212 1228 - -
Vium10172g00001 1413 PRINTS Disease resistance protein signature 854 868 - -
Vium10172g00001 1413 PRINTS Disease resistance protein signature 947 961 - -
Vium10172g00001 1413 PRINTS Disease resistance protein signature 778 793 - -
Vium10172g00001 1413 SMART AAA_5 226 360 IPR003593 GO:0016887
Vium10172g00001 1413 SMART AAA_5 775 917 IPR003593 GO:0016887
Vium10172g00001 1413 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 716 IPR044974 GO:0006952
Vium10172g00001 1413 Coils Coil 115 135 - -
Vium10172g00001 1413 Gene3D - 5 198 IPR035897 -
Vium10172g00001 1413 ProSiteProfiles TIR domain profile. 9 194 IPR000157 GO:0007165
Vium10172g00001 1413 Gene3D - 744 909 IPR027417 -
Vium10172g00001 1413 Gene3D - 199 358 IPR027417 -
Vium10172g00001 1413 Pfam TIR domain 11 162 IPR000157 GO:0007165
Vium10172g00001 1413 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 152 IPR035897 -
Vium10172g00001 1413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 457 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10172g00001 Vium-Chr10172 6508 14844 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10172g00001 206 717 WRKY Transcription Factor Family AT5G45050 31.599 7.98e-68 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10172g00001 - - vum:124819450 2752.62