Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10170g00003 ATGCCTTATCTTCTCCGACGGATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAGACGGAGCATGTTCTATTTTGCAGCCTTACACCAGAACAAGTATCTGCTTACAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGTAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTTGGTCAAGTGCTTAATGTTTGGAAGGAACAGGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAAATGATATGCAGGCCAGAGAGCGGGCTTGGCGTATTGGTCAGAAGCGGGATGTAACCGTGTATAGGTTGATAACACGGGGAACTATTGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACAAATAAGATATTGAAGAATCCACAACAGAAAAGGTTCTTTAAGGCCCGGGATATGAAAGATCTTTTCGTACTTAACGTGGATGGAGAAACTGGGTCAACTGAAACTTCAAATATTTTTAGTCAAATATCTGAAGAAGTGAATGTCATTGGGACACTGAAAGAAAATAAGGATAAGAATGAACATAGCCAAACTGCCAAACTGGATTCTGAGGATGTTGCAGTTAATAATGATGACAAGTCAGAGAGAGGATCTTCGGAGGGGAAGGGGAAAGAGAAGGTTGAACTTTATAACGGGGTTGATGATGGAACAGATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCGTGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAAGAGCAAGCATCCCAAGTTGCTCGAAGAGCTGCAGAAGCTTTACGTAAGTCACGAATGCTCAGAAGCCATGATAGTGTATCTGTTCCTACGTGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTTCGTCAGAAGTTTGGTTCAACCGTGAATCCCCTATTGGTAAGTAAAAGCAAGGTATATGACGAGTTACCCAGCAAGGGAACGACAAAATTAAATGGATTCGCTGCTGGGGCATCCGCAGGTAAAGCTTTATCTTCTGTCGAACTTTTAGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCTGGGCTCGAACATCAGTCTAGCATGTTGTCAAGTTCCACGAATCAAGCAAGATCTGTAGATGTTAGATCTTCCAGGGCTACTGCAAGTTCATCTGGATTACAACCTGAAGTATTGATTCGGCAAATCTGCACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCCAGCATAGTTGAGTATTTTAAGGAACGTATTCCCTCACAAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCTCATTGGGTTCTGAAACCAGACTATCAATTCTGA 1524 0.4252 MPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVGQVLNVWKEQGADRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEEVNVIGTLKENKDKNEHSQTAKLDSEDVAVNNDDKSERGSSEGKGKEKVELYNGVDDGTDILKSLFDANGIHSAVNHDLIMNAHDEEKMRLEEQASQVARRAAEALRKSRMLRSHDSVSVPTWTGRSGTAGAPSSVRQKFGSTVNPLLVSKSKVYDELPSKGTTKLNGFAAGASAGKALSSVELLAQIRGNQEKAIGAGLEHQSSMLSSSTNQARSVDVRSSRATASSSGLQPEVLIRQICTFIQQRGGSSDSASIVEYFKERIPSQDLALFKNLLKEIATLHKGSNGSHWVLKPDYQF 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10170g00003 507 MobiDBLite consensus disorder prediction 410 433 - -
Vium10170g00003 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 199 IPR027417 -
Vium10170g00003 507 Coils Coil 289 316 - -
Vium10170g00003 507 MobiDBLite consensus disorder prediction 315 346 - -
Vium10170g00003 507 CDD SF2_C_SNF 105 144 - -
Vium10170g00003 507 Gene3D - 106 197 IPR027417 -
Vium10170g00003 507 CDD CSB_WHD 440 506 - -
Vium10170g00003 507 MobiDBLite consensus disorder prediction 219 256 - -
Vium10170g00003 507 Pfam SNF2-related domain 2 72 IPR000330 GO:0005524|GO:0140658
Vium10170g00003 507 MobiDBLite consensus disorder prediction 323 346 - -
Vium10170g00003 507 Gene3D - 29 83 - -
Vium10170g00003 507 Gene3D - 166 191 - -
Vium10170g00003 507 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 11 183 IPR001650 -
Vium10170g00003 507 Gene3D - 12 96 IPR027417 -
Vium10170g00003 507 PANTHER SNF2/RAD54 FAMILY MEMBER 106 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10170g00003 Vium-Chr10170 15053 17972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10170g00003 82 174 RAD5 or RAD16-like Gene Family AT5G05130 40.404 1.28e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium10170g00003 SNF2_N 1.4e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10170g00003 K10841 - vum:124819444 1000.35