Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10170g00002 ATGCCAACAGTAGACTCTGAAGCATGCTTCTTCGTGCTGTCGTGGTTTATTCTTTTACTGATGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGGATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAGACGGAGCATGTTCTATTTTGCAGCCTTACACCAGAACAAGTATCTGCTTACAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGTAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTTGGTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTCCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACATCTTCTGGTCATGTTTATCGGAGAATGGATGGTCTTACTCCTGTTAAACAGAGAATGGCCTTAATAGATGAATTTAATGCCTCAAGTGAAATATTTATTTTCATTTTAACGACCAAAGTTGGGGGTTTGGGGACCAATCTTACAGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAAATGATATGCAGGCCAGAGAGCGGGCTTGGCGTATTGGTCAGAAGCGGGATGTAACCGTGTATAGGTTGATAACACGGGGAACTATTGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACAAATAAGATATTGAAGAATCCACAACAGAAAAGGTTCTTTAAGGCCCGGGATATGAAAGATCTTTTCGTACTTAACGTGGATGGAGAAACTGGGTCAACTGAAACTTCAAATATTTTTAGTCAAATATCTGAAGAAGTGAATGTCATTGGGACACTGAAAGAAAATAAGGATAAGAATGAACATAGCCAAACTGCCAAACTGGATTCTGAGGATGTTGCAGTTAATAATGATGACAAGTCAGAGAGAGGATCTTCGGAGGGGAAGGGGAAAGAGAAGGTTGAACTTTATAACGGGGTTGATGATGGAACAGATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCGTGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAAGAGCAAGCATCCCAAGTTGCTCGAAGAGCTGCAGAAGCTTTACGTAAGTCACGAATGCTCAGAAGCCATGATAGTGTATCTGTTCCTACGTGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTTCGTCAGAAGTTTGGTTCAACCGTGAATCCCCTATTGGTAAGTAAAAGCAAGGTATATGACGAGTTACCCAGCAAGGGAACGACAAAATTAAATGGATTCGCTGCTGGGGCATCCGCAGGTAAAGCTTTATCTTCTGTCGAACTTTTAGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCTGGGCTCGAACATCAGTCTAGCATGTTGTCAAGTTCCACGAATCAAGCAAGATCTGTAGATGTTAGATCTTCCAGGGCTACTGCAAGTTCATCTGGATTACAACCTGAAGTATTGATTCGGCAAATCTGCACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCCAGCATAGTTTAG 1698 0.4217 MPTVDSEACFFVLSWFILLLMCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVGQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTSSGHVYRRMDGLTPVKQRMALIDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEEVNVIGTLKENKDKNEHSQTAKLDSEDVAVNNDDKSERGSSEGKGKEKVELYNGVDDGTDILKSLFDANGIHSAVNHDLIMNAHDEEKMRLEEQASQVARRAAEALRKSRMLRSHDSVSVPTWTGRSGTAGAPSSVRQKFGSTVNPLLVSKSKVYDELPSKGTTKLNGFAAGASAGKALSSVELLAQIRGNQEKAIGAGLEHQSSMLSSSTNQARSVDVRSSRATASSSGLQPEVLIRQICTFIQQRGGSSDSASIV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10170g00002 565 SMART helicmild6 150 233 IPR001650 -
Vium10170g00002 565 MobiDBLite consensus disorder prediction 318 356 - -
Vium10170g00002 565 FunFam DNA excision repair protein ERCC-6 44 324 - -
Vium10170g00002 565 MobiDBLite consensus disorder prediction 423 446 - -
Vium10170g00002 565 Coils Coil 389 416 - -
Vium10170g00002 565 MobiDBLite consensus disorder prediction 510 533 - -
Vium10170g00002 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 299 IPR027417 -
Vium10170g00002 565 PANTHER SNF2/RAD54 FAMILY MEMBER 22 514 - -
Vium10170g00002 565 Pfam SNF2-related domain 23 101 IPR000330 GO:0005524|GO:0140658
Vium10170g00002 565 Pfam Helicase conserved C-terminal domain 131 233 IPR001650 -
Vium10170g00002 565 CDD SF2_C_SNF 119 244 - -
Vium10170g00002 565 Gene3D - 43 355 IPR027417 -
Vium10170g00002 565 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 124 283 IPR001650 -
Vium10170g00002 565 MobiDBLite consensus disorder prediction 416 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10170g00002 Vium-Chr10170 8065 11764 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10170g00002 105 287 RAD5 or RAD16-like Gene Family AT1G11100 34.946 2.91e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium10170g00002 Helicase_C 2.7e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10170g00002 K10841 - vum:124819445 1109.75