Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10170g00001 GAAGAACGGAAGCCCAAGAGGAAGGTTAAAGAAGATAAAAAGTCAGACAAAAGCAAGGGAAAACGACTTAAGAAAGTTTCGTTTGACGATGATGTTGATTTTGATACTGTTCTAGATGCAGCTTCTGCCGGCTTTGTTGAAACAGAAAGGGATGAATTGGTGAGAAAAGGAATTTTAACCCCTTTTCATAAGTTAAAGGGCTTTGAGCGCCGTTTTCAACAACCAGAAACATCAACTAGTCATAATGCAGCTGAGGAGGAAAATGCTAGTGATCTTGCTGCTGCCAGTGTTGAAAGAGCTGCCAAATCTATGTATGAGGCAGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCCTCAAGATGCACCGAAGCTTGATGCACCCACTTTTCCATTTCGAAGGCTCAGGAAACCACTACAATCTTCCAAAGCTCTTGATAAAGAAATGGAGCTAAATAAAGATTCAAAAAGGAAGAAGAAGCGGCCTCTGCCTGGAAGAAAGTGGACCAAGCGTGTTTCTTGCGATGATACACATACGGAAGAAAGTGAAAATGCAGATGGTTGCTTAGATAGTTCCAGTTTTGAAAATTTAGAAGAACAAGGCATTGATCTTGATGATCATGAATCTTATGTAACGTTAGAAGGTGGGCTGAAAATCCCTGATAAGATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGACTTGGTAAAACTGTCCAGATCTTATCTTTTCTTGGTGCACTGCACTATAGTGGCATGTACAAACCTAGCATTATTGTCTGCCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAACAAGTGGTACCCAAAATTCCTTGTAGAGCTTTTACATGAATCGGCTCAAGATTCAGCTCCTAGGAAGAAGCGAGCTAAATCTGAAGAAACAGACTGTGAAACCAATAGTTCAAGTGACAATGATTATGAAAAAAGTGAACCATCTAGAAACACAAAAAAATGGGAATCCCTGATAAATCATGTCATGAGATCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGGGATCAGTTGCTTGATATTCAATGGGGTTATGCAGTTCTTGACGAAGGGCATAGAATAAGGAATCCAAATGCTGAAGTTACCCTCGTTTGCAAGCAGCTACAAACTGTACATCGAATCATAATGACTGGTGCACCTATTCAGAATAAACTGACTGAACTATGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTCGAAGTTGAATTTGCAGTTCCTATAGCAGTTGGTGGGTATGCAAATGCTACACCTCTTCAAGTATCCACCGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGGATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAGACGGAGCATGTTCTATTTTGCAGCCTTACACCAGAACAAGTATCTGCTTACAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGTAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTTGGTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTCCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACATCTTCTGGTCATGTTTATCGGAGAATGGATGGTCTTACTCCTGTTAAACAGAGAATGGCCTTAATAGATGAATTTAATGCCTCAAGTGAAATATTTATTTTCATTTTAACGACCAAAGTTGGGGGTTTGGGGACCAATCTTACAGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAAATGATATGCAGGCCAGAGAGCGGGCTTGGCGTATTGGTCAGAAGCGGGATGTAACCGTGTATAGGTTGATAACACGGGGAACTATTGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACAAATAAGATATTGAAGAATCCACAACAGAAAAGGTTCTTTAAGGCCCGGGATATGAAAGATCTTTTCGTACTTAACGTGGATGGAGAAACTGGGTCAACTGAAACTTCAAATATTTTTAGTCAAATATCTGAAGAAGTGAATGTCATTGGGACACAGAAAGAAAATAAGGATAAGAATGAACATAGCCAAACTGCCAAACTGGATTCTGAGGATGTTGCAGTTAATAATGATGACAAGTCAGAGAGAGGATCTTCGGAGGGGAAGGGGAAAGAGAAGGTTGAACTTTATAACGGGGTTGATGATGGAACAGATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCGTGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAAGAGCAAGCATCCCAAGTTGCTCGAAGAGCTGCAGAAGCTTTACGTAAGTCACGAATGCTCAGAAGCCATGATAGTGTATCTGTTCCTACGTGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTTCGTCAGAAGTTTGGTTCAACCGTGAATCCCCTATTGGTAAGTAAAAGCAAGGTATATGACGAGTTACCCAGCAAGGGAACGACAAAATTAAATGGATTCGCTGCTGGGGCATCCGCAGGTAAAGCTTTATCTTCTGTCGAACTTTTAGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCTGGGCTCGAACATCAGTCTAGCATGTTGTCAAGTTCCACGAATCAAGCAAGATCTGTAGATGTTAGATCTTCCAGGGCTACTGCAAGTTCATCTGGATTACAACCTGAAGTATTGATTCGGCAAATCTGCACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCCAGCATAGTTGAGTATTTTAAGGAACGTATTCCCTCACAAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCTCATTGGGTTCTGAAACCAGACTATCAATTCTGA 3177 0.4149 EERKPKRKVKEDKKSDKSKGKRLKKVSFDDDVDFDTVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQPETSTSHNAAEEENASDLAAASVERAAKSMYEAARSRPTTKLLEPQDAPKLDAPTFPFRRLRKPLQSSKALDKEMELNKDSKRKKKRPLPGRKWTKRVSCDDTHTEESENADGCLDSSSFENLEEQGIDLDDHESYVTLEGGLKIPDKIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQILSFLGALHYSGMYKPSIIVCPVTLLRQWKREANKWYPKFLVELLHESAQDSAPRKKRAKSEETDCETNSSSDNDYEKSEPSRNTKKWESLINHVMRSESGLLITTYEQLRILGDQLLDIQWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEVEFAVPIAVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVGQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTSSGHVYRRMDGLTPVKQRMALIDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEEVNVIGTQKENKDKNEHSQTAKLDSEDVAVNNDDKSERGSSEGKGKEKVELYNGVDDGTDILKSLFDANGIHSAVNHDLIMNAHDEEKMRLEEQASQVARRAAEALRKSRMLRSHDSVSVPTWTGRSGTAGAPSSVRQKFGSTVNPLLVSKSKVYDELPSKGTTKLNGFAAGASAGKALSSVELLAQIRGNQEKAIGAGLEHQSSMLSSSTNQARSVDVRSSRATASSSGLQPEVLIRQICTFIQQRGGSSDSASIVEYFKERIPSQDLALFKNLLKEIATLHKGSNGSHWVLKPDYQF 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10170g00001 1058 FunFam DNA excision repair protein ERCC-6 495 775 - -
Vium10170g00001 1058 Coils Coil 840 867 - -
Vium10170g00001 1058 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 575 734 IPR001650 -
Vium10170g00001 1058 CDD SF2_C_SNF 570 695 - -
Vium10170g00001 1058 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 239 438 IPR014001 -
Vium10170g00001 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 488 IPR027417 -
Vium10170g00001 1058 MobiDBLite consensus disorder prediction 67 190 - -
Vium10170g00001 1058 MobiDBLite consensus disorder prediction 139 157 - -
Vium10170g00001 1058 Pfam SNF2-related domain 230 552 IPR000330 GO:0005524|GO:0140658
Vium10170g00001 1058 FunFam Protein CHROMATIN REMODELING 8 205 487 - -
Vium10170g00001 1058 MobiDBLite consensus disorder prediction 874 897 - -
Vium10170g00001 1058 SMART ultradead3 223 449 IPR014001 -
Vium10170g00001 1058 MobiDBLite consensus disorder prediction 72 86 - -
Vium10170g00001 1058 MobiDBLite consensus disorder prediction 961 984 - -
Vium10170g00001 1058 MobiDBLite consensus disorder prediction 1 22 - -
Vium10170g00001 1058 Gene3D - 494 800 IPR027417 -
Vium10170g00001 1058 Gene3D - 200 487 IPR038718 -
Vium10170g00001 1058 MobiDBLite consensus disorder prediction 867 897 - -
Vium10170g00001 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 747 IPR027417 -
Vium10170g00001 1058 CDD DEXHc_ERCC6 227 437 - -
Vium10170g00001 1058 MobiDBLite consensus disorder prediction 768 807 - -
Vium10170g00001 1058 MobiDBLite consensus disorder prediction 313 344 - -
Vium10170g00001 1058 PANTHER SNF2/RAD54 FAMILY MEMBER 12 1040 - -
Vium10170g00001 1058 MobiDBLite consensus disorder prediction 168 185 - -
Vium10170g00001 1058 CDD CSB_WHD 991 1057 - -
Vium10170g00001 1058 SMART helicmild6 601 684 IPR001650 -
Vium10170g00001 1058 Pfam Helicase conserved C-terminal domain 582 684 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10170g00001 Vium-Chr10170 5 8132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10170g00001 220 737 RAD5 or RAD16-like Gene Family AT1G02670 22.542 3.23e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium10170g00001 SNF2_N 3.9e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10170g00001 K10841 - gmx:100820025 1828.91