Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10164g00008 ATGGCTTCCGAGAACCTAAACCCCGTCACAGTCACAAAAGCCATAGACGCGCTTCTCAAATGGCGTCGCTCCCAATCGGAGACTCAAAAGCCCAAACTCTTCGATCAAGACGAAGAATTTGTGTACCTCGTCGTAACGCTGAAGAAGATTCCCGCGAAATCGCGCGTTAACCCTTACAAGATCCCTCTCCCACACTCCCTGTTCTCGCAGTTCTCCGAACAGTGTCTCATCCTCGACGACCGGCCGAACAAGGGCCGCGTGACCAAGGCCCAGGCCCAGGCTAAGGTCCAATCCGAGTCCATCCCCGTAGCAAAAATCCTGAAGCTGTCAAAGCTGGCATCCGATTATCGTGCTTTTGAGGCGAAGCGGAAGCTCTGTGATTCCTACGATTTGTTTTTTGCAGAGAAGAGTATTGTGCCGTTGCTTCCTCGGCTACTCGGGAAGCAGTTTTTCAAGAAGAGGAAGTTGCCGGTGCCGGTGGATCTGAAGAAGAGTAACTGGAAGGAGCAGGTGGAGAGGGCGTGCTCGTCCGCGATGCTGTTCATGCGGACCGGCACGTGTAGCGTTGTTAGGGTTGCGAAGGTGGGGATGGAGAGAGACTCAATTGTGGAGAATGTGATGGCTGCTGTTGAGGGGATTGTGGAGGTTGTGCCGAAGAAGTGGGGGAATGTGCGGTCGCTGCATCTGAAGCTGTTGGAGAGTGTGGCGTTGCCTGTGTATCAGGTTGTTCCGGATTTGAAGTTGAGGATTGAGGGTGCTAACGAGGAGGCTGAGATAAAAGAGAAGAACAAGAAGAGAAAAAAAGATGAGGAGGTTCGTGAATCGGCAAAGAAGAAGGGGAGGATTCATGAAGTTAGGTATATGGATGAGAATGGTGGTGAGGATGAGATTGAAAATGAATTGGCGAGTGATGGTGGTGGTGGCGATGACAATGTGGATGAGAAGAGGAAGAGAGGGGTTTCGAGTGTGTTGAATGGTGGGAAGAGGTTGAAGAAATCGTCTGGTGTCAAGGAAAAGAGGAAAAAGGAGAAGAGTGGAAGTGAGTTGGTTGCTAAGGATAAGGAATCTAGTGCCAAGGACAAGAAGAAAAAGGTGAAGAGTGGGAGTGAATTGGTTGTTAGGGATGAGGAATCTGGCGTGAAGAAGACGAAGAAAGGAGAATTGAAGAAGATGAAAACAGGGGAAGTGAAGGTGAAGGCTGTGAAAAGTGTGAAGGCTAAGAAAAGTAAGAAGGCCTAG 1239 0.4988 MASENLNPVTVTKAIDALLKWRRSQSETQKPKLFDQDEEFVYLVVTLKKIPAKSRVNPYKIPLPHSLFSQFSEQCLILDDRPNKGRVTKAQAQAKVQSESIPVAKILKLSKLASDYRAFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKQFFKKRKLPVPVDLKKSNWKEQVERACSSAMLFMRTGTCSVVRVAKVGMERDSIVENVMAAVEGIVEVVPKKWGNVRSLHLKLLESVALPVYQVVPDLKLRIEGANEEAEIKEKNKKRKKDEEVRESAKKKGRIHEVRYMDENGGEDEIENELASDGGGGDDNVDEKRKRGVSSVLNGGKRLKKSSGVKEKRKKEKSGSELVAKDKESSAKDKKKKVKSGSELVVRDEESGVKKTKKGELKKMKTGEVKVKAVKSVKAKKSKKA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10164g00008 412 MobiDBLite consensus disorder prediction 260 292 - -
Vium10164g00008 412 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 13 234 - -
Vium10164g00008 412 CDD Ribosomal_L1 11 239 IPR028364 -
Vium10164g00008 412 SUPERFAMILY Ribosomal protein L1 36 240 IPR023674 -
Vium10164g00008 412 FunFam Ribosomal protein L1p/L10e family 85 176 - -
Vium10164g00008 412 MobiDBLite consensus disorder prediction 260 395 - -
Vium10164g00008 412 MobiDBLite consensus disorder prediction 339 395 - -
Vium10164g00008 412 Pfam Ribosomal protein L1p/L10e family 32 235 IPR028364 -
Vium10164g00008 412 Coils Coil 243 279 - -
Vium10164g00008 412 Gene3D - 86 177 IPR016095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10164g00008 Vium-Chr10164 46828 48536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10164g00008 128 230 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 32.039 6.71e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10164g00008 K14775 - gmx:100782862 498.049