Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1015g00006 ATGGAAAAAATTCTGGAAGCAGATGCAAATACTGTATCTCAGCGTTCCTCATCTTCTTCAGTTGTTGCTTTGGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTGAATAAGTTTGTTCCCGAGGGAATGATTATCTTCAAGCTGATACATGTTTATGCTACTATAAAAGGAGTTCCAACGCCATTGGGAAATGTGATCCCTCTTTCACAAGTGCGTAATGATGTAGCAACTGCATTCAAAAAGGAAGTGGAGTGGCAAACAAACCAAATGCTGCTACCTTTCAAGAGATTGTGTGAGCAAAGAAAGGTGCATGTGGATGTTGTACTGATTGAATCAGATGACGTGGCTATTGCAATAACAGAGGAAGTGGCTAAGGGTGCTATCACCAAACTTGTTGTTGGAGCTTCATCTCGTGGCATATTTAAAAGTAAACAGAAGGGTATATCTATGAAAATATCAGTAAGCACTCCAAGATTTTGCACAGTTTATGCTATTTCGAAGGGAAAATTGTCCATACGACAGTCAGACATGCCTATTGATGGAAGCATAGTAGATGATGCTAGTGAAACCAGTTTGTCTTCCAGCAGCTCATCTAACTACACTTCCACCTCTCAGACAGAATCTGCATCAGTTTCATCATATGCTGGTTTACACTCGTCTTCCCTAGCAACACAACGATTTCAAGCTCTTTCAAGTATAAATAACATATGTATACATGATTTAACATCGGATGGAAAACTATTGCTTGAGCAAATTCTAGATAGATACAACTCCAATTTGCAAGTGAACTTTCTTTTTGATCATTTATTTTATCAGGCAAAATTGAACCTTGAGCTGGAAAAGTTGAGAATTGAGCTAAGACATGTCGAAGGACTTCATGTAGTAGCTCAAAGTGAGAAAGTTGAAGCATCCCGGAAGCTGAATGACCTTAGCAAGAAACGGTCAGAAGAAAGCATAAAAATGAAGGAGATTATTGCTAAGGAGGAGAAGGCAAAAGAATTTGCAAAACTAGAAATAGAGAAATATCAGGATGCCTCCAGAGAAGCTGTATATATGAAAGAATGTGCTGAAAGGGAGGCTGTGGAAAGGAAAGAAACAGAGATGAAAGTGATCCGTGCCACAAAAGAGAAAGAAAAGTTGGAAGGTGCTCTTAGTGGTAATATACTACAGTACCGGAAGTTTACATGGGCTGAAATAGTCTCAGCTACTTCATCTTTTTCTGAAGATCTGAGAATTGGAATGGGAGCATATGGAACAGTGTACAAGTGTAATTTGTATCACACAACTGTTGCCGTTAAAGTTCTCAACACTAATGGAAATCGTGAAAGCAAGCAATTCCAACAGGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTGCTTCTTCTGGGTGCATGTCCTGATCATGGATGTCTTGTATATGAATATATGGAGAACGGTAGCCTGGAAGACAGACTGCTGAGAAAAAACAACACATGCCCAATCACATGGTTTGAGAGATTTCGAATAGCTTGGGAAATTGCATCAGCTCTTGCCTTTCTTCACAGCTCAAAGCCAGAACCTATCATTCATCGGGACTTAAAACCAGCAAACATCTTGCTTGGTCGAAACCTTGTCAGCAAGATTGGTGACATTGGACTTAGTACAGTACTCCATTCCGATAATTTATCTACCATGTACAAGGACACAGCACCTGTTGGGACACTCTGCTACATTGATCCTGAGTATCAAAGGACTGGGTTAATATCTCCAAAATCTGATGTCTATGCTTTTGGAATGGTGATCCTACAATTATTGACAGCAAAACCAGCAATAGCACTTGCTCATAAGGTTGAAACTGCAATTGAAGGTGGGAATTTGACAGATATATTGGATCCAGAGGCAGGAGCTTGGCCATTTAAAGAGACACTAGATTTGGCTTTGTTGGGAATGAGCTGTGCAGAACTTCGGCGTAGAGACCGGCCTGATTTAAAAGATCAAGTGCTTCCAATACTTGACAGATTAAAAGAAGTTGCTGATAGGGCCCAACACTCTGCTTCAACTGTTACTATTAAATCCAAACCTCCTAATCACTTTATCTGTCCAATTCTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCTGATGGATATACATACGATCGCAAAGCAATTGATAAGTGGCTTGAAGAGAACGACAATTCACCAATGACAAACATAGCTTTACCTCACAAGCATTTAATTCCTAATTACACACTTTTGTCAGCAATTTTGGAGTGGAAGTCCGCAGAATCATGA 2298 0.3995 MEKILEADANTVSQRSSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVYATIKGVPTPLGNVIPLSQVRNDVATAFKKEVEWQTNQMLLPFKRLCEQRKVHVDVVLIESDDVAIAITEEVAKGAITKLVVGASSRGIFKSKQKGISMKISVSTPRFCTVYAISKGKLSIRQSDMPIDGSIVDDASETSLSSSSSSNYTSTSQTESASVSSYAGLHSSSLATQRFQALSSINNICIHDLTSDGKLLLEQILDRYNSNLQVNFLFDHLFYQAKLNLELEKLRIELRHVEGLHVVAQSEKVEASRKLNDLSKKRSEESIKMKEIIAKEEKAKEFAKLEIEKYQDASREAVYMKECAEREAVERKETEMKVIRATKEKEKLEGALSGNILQYRKFTWAEIVSATSSFSEDLRIGMGAYGTVYKCNLYHTTVAVKVLNTNGNRESKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDRLLRKNNTCPITWFERFRIAWEIASALAFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTVLHSDNLSTMYKDTAPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIEGGNLTDILDPEAGAWPFKETLDLALLGMSCAELRRRDRPDLKDQVLPILDRLKEVADRAQHSASTVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIDKWLEENDNSPMTNIALPHKHLIPNYTLLSAILEWKSAES 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1015g00006 765 Coils Coil 330 350 - -
Vium1015g00006 765 Coils Coil 366 388 - -
Vium1015g00006 765 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 24 148 - -
Vium1015g00006 765 ProSiteProfiles U-box domain profile. 694 765 IPR003613 GO:0004842|GO:0016567
Vium1015g00006 765 Pfam Protein kinase domain 414 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1015g00006 765 Gene3D Phosphorylase Kinase; domain 1 390 483 - -
Vium1015g00006 765 SMART serkin_6 411 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1015g00006 765 Pfam U-box domain 696 763 IPR003613 GO:0004842|GO:0016567
Vium1015g00006 765 SMART Ubox_2 698 760 IPR003613 GO:0004842|GO:0016567
Vium1015g00006 765 SUPERFAMILY Protein kinase-like (PK-like) 394 665 IPR011009 -
Vium1015g00006 765 ProSiteProfiles Protein kinase domain profile. 411 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1015g00006 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 765 IPR013083 -
Vium1015g00006 765 CDD RING-Ubox_WDSUB1-like 696 750 - -
Vium1015g00006 765 SUPERFAMILY RING/U-box 693 762 - -
Vium1015g00006 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Vium1015g00006 765 ProSitePatterns Protein kinases ATP-binding region signature. 417 438 IPR017441 GO:0005524
Vium1015g00006 765 Gene3D HUPs 8 153 IPR014729 -
Vium1015g00006 765 PANTHER OS02G0152300 PROTEIN 21 759 - -
Vium1015g00006 765 Coils Coil 277 297 - -
Vium1015g00006 765 CDD STK_N 23 173 - -
Vium1015g00006 765 Gene3D Transferase(Phosphotransferase) domain 1 484 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1015g00006 Vium-Chr1015 59022 67543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1015g00006 21 762 U-box Gene Family AT5G61560 46.526 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium1015g00006 Pkinase 1.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1015g00006 - - gsj:114409387 1169.45