Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10159g00001 ATGGGTTTTCGTTTACCTGGTATCAGAAAGGCATCTCTTCGAGCAATCCAAGCATCTCCAAAAGTCGTGGATGTGCCAAAGGGTTACATTGCAGTCTATGTTGGGGATCAAAGGAAGCGGTTTATGATCCCTGTGTCATACTTGAACCAACCTTCATTTCAAGATCTATTGAGTCAAGCTGTGGAAGAATTTGGCTATGATCATCCAACTGGTGGTCTCACAATTCCTTGTGGAGAAGATTTGTTCTTAGATATCACTTCTCGCTTCGATAGCTGCTAA 279 0.4265 MGFRLPGIRKASLRAIQASPKVVDVPKGYIAVYVGDQRKRFMIPVSYLNQPSFQDLLSQAVEEFGYDHPTGGLTIPCGEDLFLDITSRFDSC 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10159g00001 92 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 16 88 IPR003676 GO:0009733
Vium10159g00001 92 Pfam Auxin responsive protein 19 87 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10159g00001 Vium-Chr10159 2159 2905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10159g00001 24 82 Calmodulin-binding Proteins AT3G43120 54.237 1.36e-17 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10159g00001 K14488 - gmx:100795597 149.443