Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10156g00002 GCAAATGCATTGGTATATCTCCACGCTTCTGATATCATCCACAGAGACGTAAAAACCAACAACATTCTCCTTGACAACCACTTCAGTGTCAAAGTAGCAGATTTTGGCCTCTCACGTCCCTTCCCAATCCATGCCACACACGTTTCCACTGCCCCACAGGGAACTCCTGGTTATGTGGATCCAGAGTATCACGAGTACTACCAGCTCACTGATAAGAGTGATGTTTACAGCTTCGGGGTGGTGCTGATCGAGCTCATATCTTCTATGCATGCGGTTGATATCTCAAGGCGTAGACATGAGATCACCTTGTCCAACATGGCCATCAAGAAGATCCAAAGTGGTGCGTTGCATGAGATTGTATCCAACTCTTGGTTTGGGTCAGATTTCAAGGTCAGGAAAATGATCAGTGCAGTGGCTGAGTTGGCGTTTCAGTGCTTGCAGAGTTCCAAAGATGTGAGGCCTACTATGGCAAGAGTGTTGGATAGACTTGAGCGAGTCAAGAAGTTGAATGGGAAGTATACAGAGCAGAGCCAAGAGATGCTTATAATGATCATAGAAGATGATACTGCTTTCTCTCAACTGACCTCTCCTCCTTCCCTGATTCAAATTTTTCAAACTGTACGTAGTATAGTTAACTAG 639 0.4507 ANALVYLHASDIIHRDVKTNNILLDNHFSVKVADFGLSRPFPIHATHVSTAPQGTPGYVDPEYHEYYQLTDKSDVYSFGVVLIELISSMHAVDISRRRHEITLSNMAIKKIQSGALHEIVXSNSWFGSDFKVRKMISAVAELAFQCLQSSKDVRPTMARVLDRLERVKKLNGKYTEQSQEMLIMIIEDDTAFSQLTSPPSLIQIFQTVRSIVN 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10156g00002 213 SMART serkin_6 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10156g00002 213 Gene3D Transferase(Phosphotransferase) domain 1 1 193 - -
Vium10156g00002 213 SUPERFAMILY Protein kinase-like (PK-like) 1 186 IPR011009 -
Vium10156g00002 213 Pfam Protein kinase domain 2 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10156g00002 213 ProSitePatterns Serine/Threonine protein kinases active-site signature. 12 24 IPR008271 GO:0004672|GO:0006468
Vium10156g00002 213 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 175 IPR044652 GO:0004672
Vium10156g00002 213 ProSiteProfiles Protein kinase domain profile. 1 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10156g00002 Vium-Chr10156 6546 7334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10156g00002 1 168 Receptor kinase-like Gene Family AT1G25390 66.667 9.17e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium10156g00002 Pkinase 5.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10156g00002 - - vum:124819426 417.927