Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10156g00001 ATGGATAAAGTGAATATTAAAAAGGAACAACGTCATGGCATTGATCACTTATATCGTAGACCTACCCTTCCTTCATTTCTCATTTTCTCTGCTTTTTCTATGGCTAATGTTCCAGTGAGCTTCTTCTTCCTTGCATCAATGTTCTTGGTCTTGGTGGCATCAATCAGTTCCCAAGAAGAGAACAAACACGAAGAGTGTAGCAAGCCATTCAGCTGCGGACTAACGTCCATCTACTACCCTTTCTGGGGAGGGAGCAGACCCAGTTATTGTGCTAGCAACCACAAATTCAAGCTCAACTGTGAGGATAATCAAAACTCCACCCTTCAACTTGGCTCACAAACTTTTCAAGTTCTTCACTTTGATCCAGTTCAGTACACCGTGAAAATCGTTCGAACAGGCATTGTCTATGATAATTGCTCTTCCTCGGCCGTAACCAACAACTCCGTGGATTCAAATCTCTTTCGATACTTGAATGTTAGGAACATCACCATCTACTATGGTTGTCCCTATTCCCTGATTTCAAACAGCACACGCTCTTTTCAATGCAAGGAAGATGGTAACAAGAGTGCTTTCTATGGGGACCCTGCAACTGGGAAAGTCCAAGACTGTGATGGAGCTAGGATTGAAGTGCAAGTAGCACAGGAACTTGACCCTGATCGGGGAATTCAAGGACTCAACAAAGCCTTGAGTGAAGGGTTTGAAATACATCTTATTTCAGAGGCACAAGTTCAGTGCTTAAAATGCGTTTCAACTAATGGAACATGTGGGGCTAATAATGAGTCTCAGTTTTCATGCTTTTGCCCCAATGGAAGTGAAGGTTTAGATTGCTCTAATAGCGATAAATGGAACTGGCAAAGGAAGCTGGTTATAGGTGTTGCTGCTGCAGTGATAAGTGGAATTGTATTTAGCCTTGGCTTTTACATCTATTATGGTCGTCTAAAGAAGAAGAATCGTCTCCGTGAAGTAACACCTTCTGTAATATATAATTCTAAAGGAATCTCACATAGTTCTTCTTTAGAAGATTATGAGAAGGGAAGTAAATACATTGGAGTCCACTTCTTCACCTATAGTGAACTTGAAGAGGCCACAAACTTCTTTAATCCAGACAGAGAACTAGGAGACGGAGGATTTGGAAAAGTGTATTTTGGGAAACTTCAGGATGGACGATTAGTTGCAGTGAAGAGAATGTACGAGAACAGTTTGAAAAGAGTTGAGCAATTCGTGAATGAAGTGGAGATCTTAACTGGCCTACACCACCAGAACCTTGTGTCTCTATATGGATGCACTCCTCGCCACAGTAGAGAACTTCTGCTGGTGTACGAATACATTCCAAATGGAACCGTGGCTGATCATCTTCATGGTCAAAGAGCAAAACCTGGCACACTCCCTTGGCACATCAGAATGAACATTGCCATTGACCCCATACCAGAACCATCAACTAACCATTACCGGAGCCCCAACCACCAATCACGCACACCACCCACATACCCCACAATCACCCATACCAGAATTAACATTGTTCGAATTCGAAGAGGACCGAAAGGTGTTGGTGATCTGCAACTTCCAGAGCAACATCGAACACCAGCTGATAAAAGTTGTTCATTCAAACACGTTGAGTTGGTGGTCTTCTGGTACTCATGCCATGATGCAACAAAGGCATTCCAGGAAGCTGCAAAGTTACTAAATGATCTCTAA 1695 0.4265 MDKVNIKKEQRHGIDHLYRRPTLPSFLIFSAFSMANVPVSFFFLASMFLVLVASISSQEENKHEECSKPFSCGLTSIYYPFWGGSRPSYCASNHKFKLNCEDNQNSTLQLGSQTFQVLHFDPVQYTVKIVRTGIVYDNCSSSAVTNNSVDSNLFRYLNVRNITIYYGCPYSLISNSTRSFQCKEDGNKSAFYGDPATGKVQDCDGARIEVQVAQELDPDRGIQGLNKALSEGFEIHLISEAQVQCLKCVSTNGTCGANNESQFSCFCPNGSEGLDCSNSDKWNWQRKLVIGVAAAVISGIVFSLGFYIYYGRLKKKNRLREVTPSVIYNSKGISHSSSLEDYEKGSKYIGVHFFTYSELEEATNFFNPDRELGDGGFGKVYFGKLQDGRLVAVKRMYENSLKRVEQFVNEVEILTGLHHQNLVSLYGCTPRHSRELLLVYEYIPNGTVADHLHGQRAKPGTLPWHIRMNIAIDPIPEPSTNHYRSPNHQSRTPPTYPTITHTRINIVRIRRGPKGVGDLQLPEQHRTPADKSCSFKHVELVVFWYSCHDATKAFQEAAKLLNDL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10156g00001 564 ProSiteProfiles Protein kinase domain profile. 366 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10156g00001 564 Gene3D Phosphorylase Kinase; domain 1 338 442 - -
Vium10156g00001 564 Pfam Wall-associated receptor kinase C-terminal 200 269 IPR032872 -
Vium10156g00001 564 Pfam Wall-associated receptor kinase galacturonan-binding 66 131 IPR025287 GO:0030247
Vium10156g00001 564 ProSitePatterns EGF-like domain signature 1. 265 276 IPR000742 -
Vium10156g00001 564 Pfam Protein tyrosine and serine/threonine kinase 369 470 IPR001245 GO:0004672|GO:0006468
Vium10156g00001 564 SUPERFAMILY Protein kinase-like (PK-like) 348 473 IPR011009 -
Vium10156g00001 564 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524
Vium10156g00001 564 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 42 473 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10156g00001 Vium-Chr10156 403 4717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10156g00001 68 473 Receptor kinase-like Gene Family AT1G25390 34.135 2.98e-57 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium10156g00001 PK_Tyr_Ser-Thr 1.5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10156g00001 - - vum:124819427 1167.14