LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1014g00007	ATGCATACAAAGCTGTTAACCCAAATTCGTCTTCTTCATCCCCTTCTTCCCATGAAGCCTCGCACTCTTCCTCTTCTCTCGCGTGCCTTCTTCTTCCCTCCCTCCAAGTTTCTCCGAAGCGCACCTTTTAAAGCTCGCGCCTTTTCCTCCCGGGCCCACGCTCACGCCCGCGACAAGCTTCCGGTTCGCCCCTCCAAGAGCCTCGTAGACGACGAGGCTGACCTCAGCGACTGGGTCGATGATTTGCGGACCGGCAAGGTCGACCGCTTCTCCCAGCGGTCCAGCAGCGACCACGATGAAGACCGAAAATTCCGGCCGCCGCCGAGGAACAACAATAGGGCTTCCACCAATTTGGGGAAGAGGAGGGGCGAGGGTTTGCGGATGGGAAGGCAGAATGCGAACGCAAGGAGAAAGATTCAACCAAGGAGTGACGACGATGAGGAAGTGGTGGAGAGTGGAAGGAAGTTCAAAGGTGGTGGCGTTGGAGCGTTTCTCAGCGAAGATGAAAGTGAAGATGAAGAGAGTGATGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGTCAACAAAACGGTCTGAACCGGAGGACGGTTGAACCGACTCCTAGACCATCTTCTACTGGGGGTTCTGATTCTTATCTGAGTGAATCAAGATTTGACCAATGTTCCGTCTCCCAGCTGTCACTTAAAGGAGTAAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAAGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAGGACAGGCACAGAAAAAACAGTAGCATTTTTGCTTCCATCAATTGAAGTTGTGGTGAAGTCACCTCCAAGTGATCGTGACCACAGGCGGCCACCAATTTTTGTTCTTGTCATATGCCCGACTCGAGAACTTGCAAGTCAGGCTGCCACAGAGGCCAATAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTTCAACTAGGCTGATGGGTGTGAAGGTTTTGGTGCTTGATGAAGCTGATCATTTACTTGACATGGGATTTCGCAAAGACATTGAGAGGGTAATTGCTGCAGTCCCCAAACAACGACAAACTCTTATGTTTTCTGCCACAGTTCCAGAAGAGGTGCGTCAAGTTTGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCCAGAGGGTACTGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAGTTGCCCCATTGGACAAGCATTTCCCTTTACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCTCGTGGAGTTGATTATCCAGATGTCACTCTTGTTCTACAGGTTGGGTTGCCCGCAGATAGAGAACAATATATACATCGCTTGGGTAGAACAGGCCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGGAAGAGTTCTTTTTATCTACTGTAAAAGATTTGCCTATTGAGAAAGCTCCCGTGGTGCCTTCAGTTGATCCTGATACTAAGAGAAAGGTAGAAAAAGCTCTATCCCATGTGGATATGAAGAACAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGTATAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAAGCATGGGGCTTGATAACCCTCCAGCTATTGCTAAGCTGGTCCTTGGCAAGATGGGCCTCAGGAATATCCCTGGTTTACGTGCCAAATAG	2076	0.4759	MHTKLLTQIRLLHPLLPMKPRTLPLLSRAFFFPPSKFLRSAPFKARAFSSRAHAHARDKLPVRPSKSLVDDEADLSDWVDDLRTGKVDRFSQRSSSDHDEDRKFRPPPRNNNRASTNLGKRRGEGLRMGRQNANARRKIQPRSDDDEEVVESGRKFKGGGVGAFLSEDESEDEESDGSEEEEILNKSRTALFGQQNGLNRRTVEPTPRPSSTGGSDSYLSESRFDQCSVSQLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTEKTVAFLLPSIEVVVKSPPSDRDHRRPPIFVLVICPTRELASQAATEANKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFSTRLMGVKVLVLDEADHLLDMGFRKDIERVIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVPEGTEETHSQVRQMHLVAPLDKHFPLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTVKDLPIEKAPVVPSVDPDTKRKVEKALSHVDMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIAKLVLGKMGLRNIPGLRAK	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1014g00007	691	Pfam	DEAD/DEAH box helicase	247	424	IPR011545	GO:0003676\|GO:0005524
	Vium1014g00007	691	MobiDBLite	consensus disorder prediction	166	180	-	-
	Vium1014g00007	691	MobiDBLite	consensus disorder prediction	89	108	-	-
	Vium1014g00007	691	Gene3D	-	445	673	IPR027417	-
	Vium1014g00007	691	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	299	591	IPR027417	-
	Vium1014g00007	691	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	470	618	IPR001650	-
	Vium1014g00007	691	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	253	436	IPR014001	-
	Vium1014g00007	691	Gene3D	-	199	437	IPR027417	-
	Vium1014g00007	691	CDD	DEADc_MSS116	229	438	-	-
	Vium1014g00007	691	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	222	250	IPR014014	GO:0003724
	Vium1014g00007	691	Pfam	Helicase conserved C-terminal domain	475	575	IPR001650	-
	Vium1014g00007	691	MobiDBLite	consensus disorder prediction	89	222	-	-
	Vium1014g00007	691	MobiDBLite	consensus disorder prediction	137	154	-	-
	Vium1014g00007	691	CDD	SF2_C_DEAD	451	584	-	-
	Vium1014g00007	691	PANTHER	RNA HELICASE	176	620	-	-
	Vium1014g00007	691	SMART	ultradead3	241	454	IPR014001	-
	Vium1014g00007	691	MobiDBLite	consensus disorder prediction	188	222	-	-
	Vium1014g00007	691	SMART	helicmild6	494	575	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1014g00007	Vium-Chr1014	52873	58802	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1014g00007	222	606	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.715	3.06e-46	167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1014g00007	-		-	gmx:100795739	1139.02