Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10145g00001 ATGGGCAAGAAGAAACCTAAGGACCCGCAACAAACCCCTCAAACCGATAACGTTTCATCCCCTTCCAGCATTTTCAACAAGCTCTTCGGCAACGCACCAGAACAGGGCACCGCAACCGCTGCCTCTCTATTTTCCGACGAAAACCCCTTTCGAAGAAAACCTGTTCCACTTTCCGACACAACCAACCAAGCTCACATCCCTAACAACGGCAACGCCGAGAACCGCGATGCCGGCGACGAGAAGAAGCGCAAGAAGAACAAAGAGAAAAGCTCAGCCCTTGATCCAGTTTCTGTAACCGAAGTTTCGGAGAAATCGGAGAAGAAGAGGAAACGCGGTTCCGATGAAGGAAGAGAAGGAGGCCTTGATTTGGGTGCAGAAGCAGTTGGGAAAAGAAAGAGGAAAAGGGACGAAGTTGAAAGAGAGTGGGAGGAGAAGAGATATGGGCTTATGGAGGAAGTTCAAAAGGAAGGGATTGAGAATAAAACTGTTGGGAACAAGAGGAAGTCGTTGGATGATCCAGCTGATACGATGGTTGCAAAGGAAGGTTTTGATGACGAGAACAAACTTTTGAGGACTGTCTTTGTGGGGAATTTGCCTCTCAAGGTGAAAAAGAAGATTCTGTTGAAGGAGTTTAAAAAGTTTGGTGAAGTCGAGTCTGTGAGGATTCGTTCTGTTCCGATACAAGATACTAAGAAACCTAGAAAGGGAGCCATCCTTGCGAAGAAAATAAATGATGCCGCTGATAGTGTACATGCATACATTGTTTTCAAAACCGAGCAATCGGCACAGGCTTCTTTGTCTCACAACATGTCACTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACATAAAGGAGAAATTGTTCCTCTTTATGACAACAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAACTTTATCAGTTATTTTGTGGTATATCCAACCTGGAATCAAGTGTGGAAGCTGTCAGAGTTGTTCGAGATGCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAAACAAAGGAAGCTGCTAAATTTGTTGTTAAGAAAAGGAACTTGAAGCTTCGAGACCGAGAGTTGAGACTCTCTCATGCCAAAGCAGATGCCACCCCATCTAAAAGGTCAAACCCATCCTCAACACAAGCTCCTACCCTTTCTAAAAGGCCAAACACATCATCAACACAAGCTCCTGGTACTCCTTCAAAGAAATTTTCTGTGGCTTCACGGTCTCCTTCGAGCAGTGTTAACAGGTCAAACAGAAAAGCCAATGCATCTTATCAGGGTCTACGTGCTACCAAATCAGATGTGCACAAGAAAACCCAAGGTGGAGAAAAGCCAAAACAACGCCTGACAAAGAGACCTTCAGTGGCTGCCAGAAAGGCTAAAGCAAATTTGCACAAGGAGAGTGGGGCACCAAAACAAGCAGGGATAAAACGCAAGCTTGATAGTCGTACTCCAGACAGCGCCATGCGTAATAAGAAAGTAAAAAAGAACAGGTAA 1548 0.4483 MGKKKPKDPQQTPQTDNVSSPSSIFNKLFGNAPEQGTATAASLFSDENPFRRKPVPLSDTTNQAHIPNNGNAENRDAGDEKKRKKNKEKSSALDPVSVTEVSEKSEKKRKRGSDEGREGGLDLGAEAVGKRKRKRDEVEREWEEKRYGLMEEVQKEGIENKTVGNKRKSLDDPADTMVAKEGFDDENKLLRTVFVGNLPLKVKKKILLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNMSLVEGNHIRVDRACPPRKKHKGEIVPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSVEAVRVVRDAHLNVGKGIAYVLFKTKEAAKFVVKKRNLKLRDRELRLSHAKADATPSKRSNPSSTQAPTLSKRPNTSSTQAPGTPSKKFSVASRSPSSSVNRSNRKANASYQGLRATKSDVHKKTQGGEKPKQRLTKRPSVAARKAKANLHKESGAPKQAGIKRKLDSRTPDSAMRNKKVKKNR 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10145g00001 515 MobiDBLite consensus disorder prediction 477 509 - -
Vium10145g00001 515 MobiDBLite consensus disorder prediction 55 70 - -
Vium10145g00001 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 285 IPR000504 GO:0003723
Vium10145g00001 515 MobiDBLite consensus disorder prediction 74 91 - -
Vium10145g00001 515 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 282 443 - -
Vium10145g00001 515 Gene3D - 187 291 IPR012677 -
Vium10145g00001 515 SUPERFAMILY RNA-binding domain, RBD 185 291 IPR035979 GO:0003676
Vium10145g00001 515 MobiDBLite consensus disorder prediction 385 446 - -
Vium10145g00001 515 CDD RRM1_RBM34 191 281 - -
Vium10145g00001 515 Gene3D - 298 390 IPR012677 -
Vium10145g00001 515 MobiDBLite consensus disorder prediction 448 467 - -
Vium10145g00001 515 CDD RRM2_RBM34 303 379 IPR034221 -
Vium10145g00001 515 Coils Coil 514 515 - -
Vium10145g00001 515 SMART rrm1_1 192 281 IPR000504 GO:0003723
Vium10145g00001 515 SMART rrm1_1 303 379 IPR000504 GO:0003723
Vium10145g00001 515 MobiDBLite consensus disorder prediction 375 515 - -
Vium10145g00001 515 MobiDBLite consensus disorder prediction 1 141 - -
Vium10145g00001 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 383 IPR000504 GO:0003723
Vium10145g00001 515 MobiDBLite consensus disorder prediction 11 44 - -
Vium10145g00001 515 MobiDBLite consensus disorder prediction 100 141 - -
Vium10145g00001 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 235 IPR000504 GO:0003723
Vium10145g00001 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 376 IPR000504 GO:0003723
Vium10145g00001 515 SUPERFAMILY RNA-binding domain, RBD 298 392 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10145g00001 193 368 Eukaryotic Initiation Factors Gene Family AT1G71770 26.257 2.16e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10145g00001 K14837 - gmx:100809622 730.324