Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1012g00001 ATGGGCGTGGACTACTACAAGATTCTTAAAGTAGATAGGAGCGCCAAAGATGATGATATTAAGAAAGCATATCGAAGTTTGGCCATGAAGTGGCACCCTGATAAAAACCCTAACAACAAGAAAGATGCTGAAGCTAAATTCAAGCAAATCTCAGAAGCATATGATGTCTTGAGTGATCCCCAGAAGCGAGCCGTGTATGATCAGTATGGTGAGGAGGGTTTGAATGGGGTGCCGCCGGGTGGCGGTGGTTTTCCTGGTGGCAGCGATGGTGGGCCGACAACATTCCGGTTCAATCCCAGAAGTGCGGATGATATATTTTCTGAGTTTTTCGGGTTTACGAGCCCCCTTGGTCGTCGTGGAATGGGGGACATGGGTGGCCGACCTGGATTTTCCAGGGGTGGCCCGTTTGGTGAAGATATTTTTGCTCAATTTCGGAATGCTGTTGGGGAGGGCTCTGGCCATATGCCTAGAAAAGGGGCACCCATTGAGAAAACATTGTTTTGTAGTTTGGAGGATTTGTATAAAGGGACTACCAAGAAAATGAAGATTTCAAGTGATGTTAACGATGCCAGTGGGACACCCATCACAGTGCAGGAAATCCTGACAATTGAGATAAAGCCAGGTTGGAAGAAAGGAACAAAAATAACATTTCCCGAAAAGGGAAATGAACAAAGAGGAGTTATACCTTCAGACCTTGTGTTCATAATCGATGAGAAGTCTCATTCTCTCTTCAAGAGGGATGGCAATGATCTTGTTGTCACCCAGAAAGTATCTCTTGTAGAAGCCTTGACAGGTTACACAGTTCAGCTGACAACACTTGATGGTCGGAATCTGACAATTCCTATTAACAACACGATTAGTCCGACATATGAAGAAGTTGTCAAAGGAGAGGGTATGCCGATTCCAAAAGATCCTTCCAGAAAGGGAAACTTGAGAATCAAGTTCAATATCAAGTTTCCTTCCAGGCTTACATCCGAACAGAAAAGTGGCATCAAACGATTACTGACATCACCTTAA 1017 0.4454 MGVDYYKILKVDRSAKDDDIKKAYRSLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLNGVPPGGGGFPGGSDGGPTTFRFNPRSADDIFSEFFGFTSPLGRRGMGDMGGRPGFSRGGPFGEDIFAQFRNAVGEGSGHMPRKGAPIEKTLFCSLEDLYKGTTKKMKISSDVNDASGTPITVQEILTIEIKPGWKKGTKITFPEKGNEQRGVIPSDLVFIIDEKSHSLFKRDGNDLVVTQKVSLVEALTGYTVQLTTLDGRNLTIPINNTISPTYEEVVKGEGMPIPKDPSRKGNLRIKFNIKFPSRLTSEQKSGIKRLLTSP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1012g00001 338 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vium1012g00001 338 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vium1012g00001 338 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vium1012g00001 338 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vium1012g00001 338 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vium1012g00001 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 155 246 IPR008971 GO:0006457|GO:0051082
Vium1012g00001 338 FunFam DnaJ subfamily B member 13 241 321 - -
Vium1012g00001 338 Pfam DnaJ domain 4 67 IPR001623 -
Vium1012g00001 338 CDD DnaJ 4 59 IPR001623 -
Vium1012g00001 338 SUPERFAMILY Chaperone J-domain 3 91 IPR036869 -
Vium1012g00001 338 Pfam DnaJ C terminal domain 162 320 IPR002939 -
Vium1012g00001 338 CDD DnaJ_C 160 323 - -
Vium1012g00001 338 Gene3D DnaJ domain 3 120 IPR036869 -
Vium1012g00001 338 FunFam DnaJ subfamily B member 13 3 120 - -
Vium1012g00001 338 Gene3D - 161 240 - -
Vium1012g00001 338 Gene3D - 241 321 - -
Vium1012g00001 338 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 335 - -
Vium1012g00001 338 FunFam Dnaj homolog subfamily b member 158 239 - -
Vium1012g00001 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 244 329 IPR008971 GO:0006457|GO:0051082
Vium1012g00001 338 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vium1012g00001 338 SMART dnaj_3 3 62 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1012g00001 Vium-Chr1012 2605 5192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1012g00001 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 2.35e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1012g00001 K09510 - gmx:100818358 563.533