Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10107g00005 ATGAAGACAGTGTATAAAGCAATTGATGAGGTTCTTGGAACAGAGGTTGCATGGAGTCAGGTCAAACTGAATGATGCATTTCGAAAACCAGAGGACTTGGAGAGGCTTTATTTAGAGGTTCATCTCCTCAGCACCCTCAAGCACCAATCCATCATGAGATTCTACACCTCTTGGATTGATGTCAACAATAAGACCTTCAACTTCATCACAGAAATGTTTACTTCAGGGACTCTAAGAGAATACCGGAAGAAATATAAGCACATAGGTCTGAGAGCAATAAAGAGTTGGGCTCGGCAAATCTTACAGGGTCTTGTTTATCTGCATGAACATGATCCTCCAGTAATTCATAGGGACCTCAAATGTGACAATATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTGGGTCTAGCAGCAATTCTCCATGGTTCCCAACCAGCTCACAGTGTTATAGGCACTCCCGAGTTCATGGCACCAGAATTGTATGAGGAAGAATACAATGAACTAGTTGATGTGTACTCATTTGGCATGTGTGTTTTGGAAATGCTTACATCTGATTATCCATACAGTGAATGTACTAACCCTGCACAGATATACAAAAAAGTAACATCAGGGAAGCTACCAGCATCGTTTTTCAGGATTGAAGACACAGAAGCACAAAAGTTTATTGGCAAATGTCTAATAGCTGCAGCAGAGAGACCATCTGCAAAAGAATTGTTGCATGATCCATTTCTTTTGTCTAATGATGAATCATCCATGGCAAATATTAGAATTCAGAAGCCGTTTCTAAATTACAGCGAAATGGAAAAACTTCAACTGAGTGATGATTTACCAATGACTAAAATGTCAATAACTGGGAAGCTGAATTCACAAGATGACACTATCTTTCTCAAAGTGAAAATTTCTGAGAAGGATGGTTCCTGTAGGAATGTATACTTTCCCTTTGACATTTACACAGACACCCCTGTTGATGTTGCAATAGAGATGGTGAAAGAGTTGGAAATCACAGATTTGGAGCCATCTGATATTGCACGTATGATTGAAGGAGAGATATCTGTGCTGCTGCCGAAATGGAGGAATAGTAACTGTCCAGAGAGCTGCCATACACACAGTTATAATGATGACAAGGACAATGAAGATCCTCAGCATCATTTCCACTCTATTTCTTCTTGCTCATCATCCCTAGAATCAATACTAGGCTCAGTCAACAGAGTGGATGACTTACTGAATGGATATCATTGGCTCAATGGTGATATAGTTGATGATGGAAGTTCAATATGCTCTCCACATGGGATATGTTCGAACTCAAACATGTGTTCAATGGATGAGGAGGAGGAACATCATAAGGGTTCTAGAAGAAAAGATAAAGACCTCATCATAAAGAGTCACATGTGTACTAGATTTCACCCTAATGAAGACCACAAAATTCTGGCAGGACCACAAACACCTTCTACTGGCAAAAGTAACAGGATGATAGACAATCGCAGACTAACTAGGAACAAGTCATTAATTGATACGAGAAGCCAGCTACTGCACAGATCACTGGTTGAAGAGATAAACAAAAGAAGATTCAAGACAGTTGGAGCTGTGGAAAATATTGGATTTGTGACACCTTATCAGGTTACAAACAAAATTTCAAATCCAGCATGTGCTGCTTTCGATGTGAACTCTTCAAGTACGAAGGGAAAAAACTTGAGAGAAAAAAAAATTTGA 1722 0.3949 MKTVYKAIDEVLGTEVAWSQVKLNDAFRKPEDLERLYLEVHLLSTLKHQSIMRFYTSWIDVNNKTFNFITEMFTSGTLREYRKKYKHIGLRAIKSWARQILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECTNPAQIYKKVTSGKLPASFFRIEDTEAQKFIGKCLIAAAERPSAKELLHDPFLLSNDESSMANIRIQKPFLNYSEMEKLQLSDDLPMTKMSITGKLNSQDDTIFLKVKISEKDGSCRNVYFPFDIYTDTPVDVAIEMVKELEITDLEPSDIARMIEGEISVLLPKWRNSNCPESCHTHSYNDDKDNEDPQHHFHSISSCSSSLESILGSVNRVDDLLNGYHWLNGDIVDDGSSICSPHGICSNSNMCSMDEEEEHHKGSRRKDKDLIIKSHMCTRFHPNEDHKILAGPQTPSTGKSNRMIDNRRLTRNKSLIDTRSQLLHRSLVEEINKRRFKTVGAVENIGFVTPYQVTNKISNPACAAFDVNSSSTKGKNLREKKI 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10107g00005 573 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10107g00005 573 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 444 - -
Vium10107g00005 573 SUPERFAMILY Protein kinase-like (PK-like) 3 284 IPR011009 -
Vium10107g00005 573 Gene3D Transferase(Phosphotransferase) domain 1 73 255 - -
Vium10107g00005 573 Pfam Protein kinase domain 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10107g00005 573 Gene3D Phosphorylase Kinase; domain 1 1 71 - -
Vium10107g00005 573 FunFam probable serine/threonine-protein kinase WNK9 73 253 - -
Vium10107g00005 573 FunFam Probable serine/threonine-protein kinase WNK1 1 71 - -
Vium10107g00005 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 114 126 IPR008271 GO:0004672|GO:0006468
Vium10107g00005 573 ProSiteProfiles Protein kinase domain profile. 1 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10107g00005 Vium-Chr10107 81314 86896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10107g00005 1 547 MAP Kinase Kinase Kinase AT5G58350 56.553 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium10107g00005 Pkinase 4.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10107g00005 K08867 - gmx:100778102 919.457