Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10107g00004 ATGTATTCCAATAAAGGGTATAGAGATGATCGCAAAGCTGAGCCTCGTTACATTGAAACCGACCCAAATGGTAGATATGCTCGGGTTGGAGATATTTTAGGAAAAGGGGCAATGAAGACAGTGTATAAAGCAATTGATGAGGTTCTTGGAACAGAGGTTGCATGGAGTCAGGTCAAACTGAATGATGCATTTCGAAAACCAGAGGACTTGGAGAGGCTTTATTTAGAGGTTCATCTCCTCAGCACCCTCAAGCACCAATCCATCATGAGATTCTACACCTCTTGGATTGATGTCAACAATAAGACCTTCAACTTCATCACAGAAATGTTTACTTCAGGGACTCTAAGAGAATACCGGAAGAAATATAAGCACATAGGTCTGAGAGCAATAAAGAGTTGGGCTCGGCAAATCTTACAGGGTCTTGTTTATCTGCATGAACATGATCCTCCAGTAATTCATAGGGACCTCAAATGTGACAATATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTGGGTCTAGCAGCAATTCTCCATGGTTCCCAACCAGCTCACAGTGTTATAGGCACTCCCGAGTTCATGGCACCAGAATTGTATGAGGAAGAATACAATGAACTAGTTGATGTGTACTCATTTGGCATGTGTGTTTTGGAAATGCTTACATCTGATTATCCATACAGTGAATGTACTAACCCTGCACAGATATACAAAAAAGTAACATCAGGGAAGCTACCAGCATCGTTTTTCAGGATTGAAGACACAGAAGCACAAAAGTTTATTGGCAAATGTCTAATAGCTGCAGCAGAGAGACCATCTGCAAAAGAATTGTTGCATGATCCATTTCTTTTGTCTAATGATGAATCATCCATGGCAAATATTAGAATTCAGAAGCCGTTTCTAAATTACAGCGAAATGGAAAAACTTCAACTGAGTGATGATTTACCAATGACTAAAATGTCAATAACTGGGAAGCTGAATTCACAAGATGACACTATCTTTCTCAAAGTGAAAATTTCTGAGAAGGATGGTTCCTGTAGGAATGTATACTTTCCCTTTGACATTTACACAGACACCCCTGTTGATGTTGCAATAGAGATGGTGAAAGAGTTGGAAATCACAGATTTGGAGCCATCTGATATTGCACGTATGATTGAAGGAGAGATATCTGTGCTGCTGCCGAAATGGAGGAATAGTAACTGTCCAGAGAGCTGCCATACACACAGTTATAATGATGACAAGGACAATGAAGATCCTCAGCATCATTTCCACTCTATTTCTTCTTGCTCATCATCCCTAGAATCAATACTAGGCTCAGTCAACAGAGTGGATGACTTACTGAATGGATATCATTGGCTCAATGGTGATATAGTTGATGATGGAAGTTCAATATGCTCTCCACATGGGATATGTTCGAACTCAAACATGTGTTCAATGGATGAGGAGGAGGAACATCATAAGGGTTCTAGAAGAAAAGATAAAGACCTCATCATAAAGAGTCACATGTGTACTAGATTTCACCCTAATGAAGACCACAAAATTCTGGCAGGACCACAAACACCTTCTACTGGCAAAAGTAACAGGATGATAGACAATCGCAGACTAACTAGGAACAAGTCATTAATTGATACGAGAAGCCAGCTACTGCACAGATCACTGGTTGAAGAGATAAACAAAAGAAGATTCAAGACAGTTGGAGCTGTGGAAAATATTGGATTTGTGACACCTTATCAGGTTACAAACAAAATTTCAAATCCAGCATGTGCTGCTTTCGATGTGAACTCTTCAAGTACGAAGGGAAAAAACTTGAGAGAAAAAAAAATTTGA 1833 0.3966 MYSNKGYRDDRKAEPRYIETDPNGRYARVGDILGKGAMKTVYKAIDEVLGTEVAWSQVKLNDAFRKPEDLERLYLEVHLLSTLKHQSIMRFYTSWIDVNNKTFNFITEMFTSGTLREYRKKYKHIGLRAIKSWARQILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECTNPAQIYKKVTSGKLPASFFRIEDTEAQKFIGKCLIAAAERPSAKELLHDPFLLSNDESSMANIRIQKPFLNYSEMEKLQLSDDLPMTKMSITGKLNSQDDTIFLKVKISEKDGSCRNVYFPFDIYTDTPVDVAIEMVKELEITDLEPSDIARMIEGEISVLLPKWRNSNCPESCHTHSYNDDKDNEDPQHHFHSISSCSSSLESILGSVNRVDDLLNGYHWLNGDIVDDGSSICSPHGICSNSNMCSMDEEEEHHKGSRRKDKDLIIKSHMCTRFHPNEDHKILAGPQTPSTGKSNRMIDNRRLTRNKSLIDTRSQLLHRSLVEEINKRRFKTVGAVENIGFVTPYQVTNKISNPACAAFDVNSSSTKGKNLREKKI 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10107g00004 610 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Vium10107g00004 610 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10107g00004 610 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Vium10107g00004 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 481 - -
Vium10107g00004 610 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Vium10107g00004 610 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10107g00004 610 SUPERFAMILY Protein kinase-like (PK-like) 29 321 IPR011009 -
Vium10107g00004 610 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10107g00004 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vium10107g00004 610 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10107g00004 Vium-Chr10107 81314 86896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10107g00004 17 584 MAP Kinase Kinase Kinase AT5G58350 56.920 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium10107g00004 Pkinase 5.1e-48 CL0016