Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10107g00002 ATGGCCAGAAAGAAGTTGGATCTGACATACATCACCAATGACTCAAAGAGAAAGACAACCTTAAAGAAAAGGAAACATGGTTTGATCAAGAAAATGAATGAAATTAGCACCCTTTGTGGGATTGAGGCATGTGCCATAATCTATTCTCCAAATGATCCTCAGCCAGAGGTTTGGCCATCTGAGCCAGAAGTACAAAGGGTGCTTTCCAAGTTCATGGAAATGTCTGAGCAGAAACAATGCAGAAAGATGTTGAATCAGGAGAGCTTGTTGAAGCAAATAATCATCAAAGGCCAACAGCAGTTGACAAGACAAAGGAATGACAACAGGAAGAAAGAAATGACTCATCTCATGTTTCAGTACTTGAATGTTGGGAGGGTTTATGACAATCCCAGTTTGATAGATTTGAATGATCTCTCATGGCTGATTGATCAGAACCTGAATGAAATAAAAAAGAAGATGACTATGATCCAAATCCAAGAAGGGGCACCAGTGACTGAAAATGGAGGAGAACGTGGACACATGCATCATGCTCAAGGGCTAGAGAACAGGACCGACACCATTCAGAACCAATATTGA 576 0.408 MARKKLDLTYITNDSKRKTTLKKRKHGLIKKMNEISTLCGIEACAIIYSPNDPQPEVWPSEPEVQRVLSKFMEMSEQKQCRKMLNQESLLKQIIIKGQQQLTRQRNDNRKKEMTHLMFQYLNVGRVYDNPSLIDLNDLSWLIDQNLNEIKKKMTMIQIQEGAPVTENGGERGHMHHAQGLENRTDTIQNQY 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10107g00002 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium10107g00002 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium10107g00002 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium10107g00002 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium10107g00002 191 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vium10107g00002 191 PANTHER MADS BOX PROTEIN 3 154 - -
Vium10107g00002 191 MobiDBLite consensus disorder prediction 164 191 - -
Vium10107g00002 191 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vium10107g00002 191 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vium10107g00002 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Vium10107g00002 191 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vium10107g00002 191 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10107g00002 Vium-Chr10107 48439 49438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10107g00002 1 157 Type I MADS-box Gene Family AT5G48670 51.592 1.11e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium10107g00002 SRF-TF 5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10107g00002 - - vra:106752446 318.161