Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10106g00009 ATGGGGCATAGACATTTATATAGCTCAACTCCAATGCTTGATGGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACAATATGTGAACCTTGATTGGATCTCTATTGCAGGTAGGAGTACCACTTCCGACAATGGCTCTTTTATTTATCCTATGGAAAATATGTCCATAGATAGCATCTCTTTTCCATCTCATTGGAACACTGCTCCAAGGTCAAATGGGTATACCTCAACAAGTCTCAACATTGAAGCACCCTCTCATCAAACAGATATATCAGGCACTTCTAATGATCATTTTCTGCATCCATCAAGTGGTGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCTTCTAGTTCCAATTATGACAGACAATCATTTCCGGTTGCTAATGGTGGTTTTATTGATCTCACAATGGGAAATGGGCGAGGGCCTGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTTCAGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTGCAAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAGAAGCCCACTATGGATTCACTATATATGCCTTGGGATCATGTTAATATGACACCCGATCATGTGAATATGACACCCTCATTTAGAGGTAGAGGCCTTTCAATACGGGGTGAGAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCGAATACTCATTCACACAACTCATTCTCTACCGGTCCCCAAATGGACCATTCCAGCATGGTAGATCTTTCTACTCAAACATCTGGATCTTTGACAAGGGATTGGAGCCAAATGAGTGTGTGTCTTGCTCATGGAAGGGTGCCATCATCAGATGCAAATGCTTTTAATCATGAGGCTAATCATTTCCTTGTTGGAAATGGTTCTAGTAATGCTCCAGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAACAGAAATCCTACTGCTCCACAAAGTTTTCATAGTAATTGTCCGGCTCAACCTGCTAGAGGAGTTCGCAGTAACTACTCTCAAAGATCTACTCCAACTTTTAGGGCTTCTTCCAGCTTGCGCTTGGGTCGTATGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGTTGGTCTTAATGATCAATTTAACTTTGAGGGTTTCATGATTGTTGATCGCACTTCACTTTATGGTAGGAATATGATTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTCCTTGCACTCGGAGAGAGAATAGGCCATGTCAGCACAGGATTATCTGAGGATTTGATTTCCAAGTATTTGACAGAAACGATATACTGTTCATCCGAGCCAAGTCAAGAAGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGACGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAGAAAGTGGTTATCAATGAAGAAAGTATGTCCTATATGCAAAGCTTCTGCTTTGCCTGAGGAAACGAAGGATAAATAA 1698 0.4229 MGHRHLYSSTPMLDGEPDQNWNHMHTDQQYVNLDWISIAGRSTTSDNGSFIYPMENMSIDSISFPSHWNTAPRSNGYTSTSLNIEAPSHQTDISGTSNDHFLHPSSGGMFYAVSENYVHQPSSSNYDRQSFPVANGGFIDLTMGNGRGPGPHKRKSPGVPSVCERGSTSRCFNAASANAADRPTSSELRPEKPTMDSLYMPWDHVNMTPDHVNMTPSFRGRGLSIRGESSLRNVRSRSTLDLESNLARTHLSNTHSHNSFSTGPQMDHSSMVDLSTQTSGSLTRDWSQMSVCLAHGRVPSSDANAFNHEANHFLVGNGSSNAPVDVGGFHNEFGTNRNPTAPQSFHSNCPAQPARGVRSNYSQRSTPTFRASSSLRLGRMAPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEVGLNDQFNFEGFMIVDRTSLYGRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEPSQEEACAICLEEYKNVDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKASALPEETKDK 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10106g00009 565 MobiDBLite consensus disorder prediction 1 21 - -
Vium10106g00009 565 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 478 558 - -
Vium10106g00009 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 558 IPR013083 -
Vium10106g00009 565 CDD RING-H2_RNF24-like 510 557 - -
Vium10106g00009 565 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 151 558 IPR045191 GO:0061630
Vium10106g00009 565 Pfam Ring finger domain 511 554 IPR001841 -
Vium10106g00009 565 MobiDBLite consensus disorder prediction 144 165 - -
Vium10106g00009 565 MobiDBLite consensus disorder prediction 352 372 - -
Vium10106g00009 565 ProSiteProfiles Zinc finger RING-type profile. 512 554 IPR001841 -
Vium10106g00009 565 SUPERFAMILY RING/U-box 500 557 - -
Vium10106g00009 565 MobiDBLite consensus disorder prediction 253 272 - -
Vium10106g00009 565 SMART ring_2 512 553 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10106g00009 Vium-Chr10106 9549 13707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10106g00009 1 564 C3H Transcription Factor Family AT2G37150 41.319 2.37e-106 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10106g00009 - - gmx:100786013 934.48