Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10106g00008 ATGGGGCATAGACATTTATATAGCTCAACTCCAATGCTTGATGGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACAATATGTGAACCTTGATTGGATCTCTATTGCAGGTAGGAGTACCACTTCCGACAATGGCTCTTTTATTTATCCTATGGAAAATATGTCCATAGATAGCATCTCTTTTCCATCTCATTGGAACACTGCTCCAAGGTCAAATGGGTATACCTCAACAAGTCTCAACATTGAAGCACCCTCTCATCAAACAGATATATCAGGCACTTCTAATGATCATTTTCTGCATCCATCAAGTGGTGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCTTCTAGTTCCAATTATGACAGACAATCATTTCCGGTTGCTAATGGTGGTTTTATTGATCTCACAATGGGAAATGGGCGAGGGCCTGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTTCAGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTGCAAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAGAAGCCCACTATGGATTCACTATATATGCCTTGGGATCATGTTAATATGACACCCGATCATGTGAATATGACACCCTCATTTAGAGGTAGAGGCCTTTCAATACGGGGTGAGAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCGAATACTCATTCACACAACTCATTCTCTACCGGTCCCCAAATGGACCATTCCAGCATGGTAGATCTTTCTACTCAAACATCTGGATCTTTGACAAGGGATTGGAGCCAAATGAGTGTGTGTCTTGCTCATGGAAGGGTGCCATCATCAGATGCAAATGCTTTTAATCATGAGGCTAATCATTTCCTTGTTGGAAATGGTTCTAGTAATGCTCCAGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAACAGAAATCCTACTGCTCCACAAAGTTTTCATAGTAATTGTCCGGCTCAACCTGCTAGAGGAGTTCGCAGTAACTACTCTCAAAGATCTACTCCAACTTTTAGGGCTTCTTCCAGCTTGCGCTTGGGTCGTATGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGGTTTCATGATTGTTGATCGCACTTCACTTTATGGTAGGAATATGATTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTCCTTGCACTCGGAGAGAGAATAGGCCATGTCAGCACAGGATTATCTGAGGATTTGATTTCCAAGTATTTGACAGAAACGATATACTGTTCATCCGAGCCAAGTCAAGAAGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGACGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAGAAAGTGGTTATCAATGAAGAAAGTATGTCCTATATGCAAAGCTTCTGCTTTGCCTGAGGAAACGAAGGATAAATAA 1668 0.4251 MGHRHLYSSTPMLDGEPDQNWNHMHTDQQYVNLDWISIAGRSTTSDNGSFIYPMENMSIDSISFPSHWNTAPRSNGYTSTSLNIEAPSHQTDISGTSNDHFLHPSSGGMFYAVSENYVHQPSSSNYDRQSFPVANGGFIDLTMGNGRGPGPHKRKSPGVPSVCERGSTSRCFNAASANAADRPTSSELRPEKPTMDSLYMPWDHVNMTPDHVNMTPSFRGRGLSIRGESSLRNVRSRSTLDLESNLARTHLSNTHSHNSFSTGPQMDHSSMVDLSTQTSGSLTRDWSQMSVCLAHGRVPSSDANAFNHEANHFLVGNGSSNAPVDVGGFHNEFGTNRNPTAPQSFHSNCPAQPARGVRSNYSQRSTPTFRASSSLRLGRMAPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEGFMIVDRTSLYGRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEPSQEEACAICLEEYKNVDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKASALPEETKDK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10106g00008 555 CDD RING-H2_RNF24-like 500 547 - -
Vium10106g00008 555 MobiDBLite consensus disorder prediction 1 21 - -
Vium10106g00008 555 SUPERFAMILY RING/U-box 490 547 - -
Vium10106g00008 555 SMART ring_2 502 543 IPR001841 -
Vium10106g00008 555 ProSiteProfiles Zinc finger RING-type profile. 502 544 IPR001841 -
Vium10106g00008 555 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 153 548 IPR045191 GO:0061630
Vium10106g00008 555 MobiDBLite consensus disorder prediction 144 165 - -
Vium10106g00008 555 Pfam Ring finger domain 501 544 IPR001841 -
Vium10106g00008 555 MobiDBLite consensus disorder prediction 352 372 - -
Vium10106g00008 555 MobiDBLite consensus disorder prediction 253 272 - -
Vium10106g00008 555 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 468 548 - -
Vium10106g00008 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 548 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10106g00008 Vium-Chr10106 9549 13707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10106g00008 1 554 C3H Transcription Factor Family AT2G37150 40.625 5.21e-100 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10106g00008 - - gmx:547939 942.184