Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10106g00007 ATGGGGCATAGACATTTATATAGCTCAACTCCAATGCTTGATGGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACAATATGTGAACCTTGGTAGGAGTACCACTTCCGACAATGGCTCTTTTATTTATCCTATGGAAAATATGTCCATAGATAGCATCTCTTTTCCATCTCATTGGAACACTGCTCCAAGGTCAAATGGGTATACCTCAACAAGTCTCAACATTGAAGCACCCTCTCATCAAACAGATATATCAGGCACTTCTAATGATCATTTTCTGCATCCATCAAGTGGTGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCTTCTAGTTCCAATTATGACAGACAATCATTTCCGGTTGCTAATGGTGGTTTTATTGATCTCACAATGGGAAATGGGCGAGGGCCTGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTTCAGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTGCAAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAGAAGCCCACTATGGATTCACTATATATGCCTTGGGATCATGTTAATATGACACCCGATCATGTGAATATGACACCCTCATTTAGAGGTAGAGGCCTTTCAATACGGGGTGAGAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCGAATACTCATTCACACAACTCATTCTCTACCGGTCCCCAAATGGACCATTCCAGCATGGTAGATCTTTCTACTCAAACATCTGGATCTTTGACAAGGGATTGGAGCCAAATGAGTGTGTGTCTTGCTCATGGAAGGGTGCCATCATCAGATGCAAATGCTTTTAATCATGAGGCTAATCATTTCCTTGTTGGAAATGGTTCTAGTAATGCTCCAGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAACAGAAATCCTACTGCTCCACAAAGTTTTCATAGTAATTGTCCGGCTCAACCTGCTAGAGGAGTTCGCAGTAACTACTCTCAAAGATCTACTCCAACTTTTAGGGCTTCTTCCAGCTTGCGCTTGGGTCGTATGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGTTGGTCTTAATGATCAATTTAACTTTGAGGTATCTATTGCATCTTCTCTCAAGAGCTTTGTTCTTGGTTTCATGATTGTTGATCGCACTTCACTTTATGGTAGGAATATGATTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTCCTTGCACTCGGAGAGAGAATAGGCCATGTCAGCACAGGATTATCTGAGGATTTGATTTCCAAGTATTTGACAGAAACGATATACTGTTCATCCGAGCCAAGTCAAGAAGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGACGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAGAAAGTGGTTATCAATGAAGAAAGTATGTCCTATATGCAAAGCTTCTGCTTTGCCTGAGGAAACGAAGGATAAATAA 1716 0.4219 MGHRHLYSSTPMLDGEPDQNWNHMHTDQQYVNLGRSTTSDNGSFIYPMENMSIDSISFPSHWNTAPRSNGYTSTSLNIEAPSHQTDISGTSNDHFLHPSSGGMFYAVSENYVHQPSSSNYDRQSFPVANGGFIDLTMGNGRGPGPHKRKSPGVPSVCERGSTSRCFNAASANAADRPTSSELRPEKPTMDSLYMPWDHVNMTPDHVNMTPSFRGRGLSIRGESSLRNVRSRSTLDLESNLARTHLSNTHSHNSFSTGPQMDHSSMVDLSTQTSGSLTRDWSQMSVCLAHGRVPSSDANAFNHEANHFLVGNGSSNAPVDVGGFHNEFGTNRNPTAPQSFHSNCPAQPARGVRSNYSQRSTPTFRASSSLRLGRMAPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEVGLNDQFNFEVSIASSLKSFVLGFMIVDRTSLYGRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEPSQEEACAICLEEYKNVDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKASALPEETKDK 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10106g00007 571 CDD RING-H2_RNF24-like 516 563 - -
Vium10106g00007 571 MobiDBLite consensus disorder prediction 138 159 - -
Vium10106g00007 571 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 484 564 - -
Vium10106g00007 571 ProSiteProfiles Zinc finger RING-type profile. 518 560 IPR001841 -
Vium10106g00007 571 MobiDBLite consensus disorder prediction 346 366 - -
Vium10106g00007 571 MobiDBLite consensus disorder prediction 1 23 - -
Vium10106g00007 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 564 IPR013083 -
Vium10106g00007 571 MobiDBLite consensus disorder prediction 247 266 - -
Vium10106g00007 571 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 145 564 IPR045191 GO:0061630
Vium10106g00007 571 Pfam Ring finger domain 517 560 IPR001841 -
Vium10106g00007 571 SUPERFAMILY RING/U-box 506 563 - -
Vium10106g00007 571 SMART ring_2 518 559 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10106g00007 Vium-Chr10106 9549 13707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10106g00007 1 570 C3H Transcription Factor Family AT2G37150 40.722 6.37e-105 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10106g00007 - - gmx:547939 935.636