Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10106g00006 ATGGGGCATAGACATTTATATAGCTCAACTCCAATGCTTGATGGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACAATATGTGAACCTTGGTAGGAGTACCACTTCCGACAATGGCTCTTTTATTTATCCTATGGAAAATATGTCCATAGATAGCATCTCTTTTCCATCTCATTGGAACACTGCTCCAAGGTCAAATGGGTATACCTCAACAAGTCTCAACATTGAAGCACCCTCTCATCAAACAGATATATCAGGCACTTCTAATGATCATTTTCTGCATCCATCAAGTGGTGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCTTCTAGTTCCAATTATGACAGACAATCATTTCCGGTTGCTAATGGTGGTTTTATTGATCTCACAATGGGAAATGGGCGAGGGCCTGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTTCAGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTGCAAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAGAAGCCCACTATGGATTCACTATATATGCCTTGGGATCATGTTAATATGACACCCGATCATGTGAATATGACACCCTCATTTAGAGGTAGAGGCCTTTCAATACGGGGTGAGAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCGAATACTCATTCACACAACTCATTCTCTACCGGTCCCCAAATGGACCATTCCAGCATGGTAGATCTTTCTACTCAAACATCTGGATCTTTGACAAGGGATTGGAGCCAAATGAGTGTGTGTCTTGCTCATGGAAGGGTGCCATCATCAGATGCAAATGCTTTTAATCATGAGGCTAATCATTTCCTTGTTGGAAATGGTTCTAGTAATGCTCCAGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAACAGAAATCCTACTGCTCCACAAAGTTTTCATAGTAATTGTCCGGCTCAACCTGCTAGAGGAGTTCGCAGTAACTACTCTCAAAGATCTACTCCAACTTTTAGGGCTTCTTCCAGCTTGCGCTTGGGTCGTATGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGTTGGTCTTAATGATCAATTTAACTTTGAGGGTTTCATGATTGTTGATCGCACTTCACTTTATGGTAGGAATATGATTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTCCTTGCACTCGGAGAGAGAATAGGCCATGTCAGCACAGGATTATCTGAGGATTTGATTTCCAAGTATTTGACAGAAACGATATACTGTTCATCCGAGCCAAGTCAAGAAGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGACGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAGAAAGTGGTTATCAATGAAGAAAGTATGTCCTATATGCAAAGCTTCTGCTTTGCCTGAGGAAACGAAGGATAAATAA 1680 0.4232 MGHRHLYSSTPMLDGEPDQNWNHMHTDQQYVNLGRSTTSDNGSFIYPMENMSIDSISFPSHWNTAPRSNGYTSTSLNIEAPSHQTDISGTSNDHFLHPSSGGMFYAVSENYVHQPSSSNYDRQSFPVANGGFIDLTMGNGRGPGPHKRKSPGVPSVCERGSTSRCFNAASANAADRPTSSELRPEKPTMDSLYMPWDHVNMTPDHVNMTPSFRGRGLSIRGESSLRNVRSRSTLDLESNLARTHLSNTHSHNSFSTGPQMDHSSMVDLSTQTSGSLTRDWSQMSVCLAHGRVPSSDANAFNHEANHFLVGNGSSNAPVDVGGFHNEFGTNRNPTAPQSFHSNCPAQPARGVRSNYSQRSTPTFRASSSLRLGRMAPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEVGLNDQFNFEGFMIVDRTSLYGRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEPSQEEACAICLEEYKNVDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKASALPEETKDK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10106g00006 559 CDD RING-H2_RNF24-like 504 551 - -
Vium10106g00006 559 ProSiteProfiles Zinc finger RING-type profile. 506 548 IPR001841 -
Vium10106g00006 559 SUPERFAMILY RING/U-box 494 551 - -
Vium10106g00006 559 MobiDBLite consensus disorder prediction 138 159 - -
Vium10106g00006 559 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 472 552 - -
Vium10106g00006 559 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 145 552 IPR045191 GO:0061630
Vium10106g00006 559 MobiDBLite consensus disorder prediction 346 366 - -
Vium10106g00006 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 473 552 IPR013083 -
Vium10106g00006 559 MobiDBLite consensus disorder prediction 1 23 - -
Vium10106g00006 559 MobiDBLite consensus disorder prediction 247 266 - -
Vium10106g00006 559 Pfam Ring finger domain 505 548 IPR001841 -
Vium10106g00006 559 SMART ring_2 506 547 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10106g00006 Vium-Chr10106 9549 13707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10106g00006 1 558 C3H Transcription Factor Family AT2G37150 41.579 1.37e-108 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10106g00006 - - gmx:100786013 941.028