Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10106g00005 ATGGGGCATAGACATTTATATAGCTCAACTCCAATGCTTGATGGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACAATATGTGAACCTTGATTGGATCTCTATTGCAGGTAGGAGTACCACTTCCGACAATGGCTCTTTTATTTATCCTATGGAAAATATGTCCATAGATAGCATCTCTTTTCCATCTCATTGGAACACTGCTCCAAGGTCAAATGGGTATACCTCAACAAGTCTCAACATTGAAGCACCCTCTCATCAAACAGATATATCAGGCACTTCTAATGATCATTTTCTGCATCCATCAAGTGGTGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCTTCTAGTTCCAATTATGACAGACAATCATTTCCGGTTGCTAATGGTGGTTTTATTGATCTCACAATGGGAAATGGGCGAGGGCCTGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTTCAGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTGCAAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAGAAGCCCACTATGGATTCACTATATATGCCTTGGGATCATGTTAATATGACACCCGATCATGTGAATATGACACCCTCATTTAGAGGTAGAGGCCTTTCAATACGGGGTGAGAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCGAATACTCATTCACACAACTCATTCTCTACCGGTCCCCAAATGGACCATTCCAGCATGGTAGATCTTTCTACTCAAACATCTGGATCTTTGACAAGGGATTGGAGCCAAATGAGTGTGTGTCTTGCTCATGGAAGGGTGCCATCATCAGATGCAAATGCTTTTAATCATGAGGCTAATCATTTCCTTGTTGGAAATGGTTCTAGTAATGCTCCAGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAACAGAAATCCTACTGCTCCACAAAGTTTTCATAGTAATTGTCCGGCTCAACCTGCTAGAGGAGTTCGCAGTAACTACTCTCAAAGATCTACTCCAACTTTTAGGGCTTCTTCCAGCTTGCGCTTGGGTCGTATGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGTTGGTCTTAATGATCAATTTAACTTTGAGGTATCTATTGCATCTTCTCTCAAGAGCTTTGTTCTTGGTTTCATGATTGTTGATCGCACTTCACTTTATGGTAGGAATATGATTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTCCTTGCACTCGGAGAGAGAATAGGCCATGTCAGCACAGGATTATCTGAGGATTTGATTTCCAAGTATTTGACAGAAACGATATACTGTTCATCCGAGCCAAGTCAAGAAGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGACGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAGAAAGTGGTTATCAATGAAGAAAGTATGTCCTATATGCAAAGCTTCTGCTTTGCCTGAGGAAACGAAGGATAAATAA 1734 0.4216 MGHRHLYSSTPMLDGEPDQNWNHMHTDQQYVNLDWISIAGRSTTSDNGSFIYPMENMSIDSISFPSHWNTAPRSNGYTSTSLNIEAPSHQTDISGTSNDHFLHPSSGGMFYAVSENYVHQPSSSNYDRQSFPVANGGFIDLTMGNGRGPGPHKRKSPGVPSVCERGSTSRCFNAASANAADRPTSSELRPEKPTMDSLYMPWDHVNMTPDHVNMTPSFRGRGLSIRGESSLRNVRSRSTLDLESNLARTHLSNTHSHNSFSTGPQMDHSSMVDLSTQTSGSLTRDWSQMSVCLAHGRVPSSDANAFNHEANHFLVGNGSSNAPVDVGGFHNEFGTNRNPTAPQSFHSNCPAQPARGVRSNYSQRSTPTFRASSSLRLGRMAPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEVGLNDQFNFEVSIASSLKSFVLGFMIVDRTSLYGRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEPSQEEACAICLEEYKNVDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKASALPEETKDK 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10106g00005 577 MobiDBLite consensus disorder prediction 1 21 - -
Vium10106g00005 577 Pfam Ring finger domain 523 566 IPR001841 -
Vium10106g00005 577 CDD RING-H2_RNF24-like 522 569 - -
Vium10106g00005 577 ProSiteProfiles Zinc finger RING-type profile. 524 566 IPR001841 -
Vium10106g00005 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 491 570 IPR013083 -
Vium10106g00005 577 MobiDBLite consensus disorder prediction 144 165 - -
Vium10106g00005 577 SMART ring_2 524 565 IPR001841 -
Vium10106g00005 577 MobiDBLite consensus disorder prediction 352 372 - -
Vium10106g00005 577 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 490 570 - -
Vium10106g00005 577 SUPERFAMILY RING/U-box 512 569 - -
Vium10106g00005 577 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 151 570 IPR045191 GO:0061630
Vium10106g00005 577 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10106g00005 Vium-Chr10106 9549 13707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10106g00005 1 576 C3H Transcription Factor Family AT2G37150 40.476 6.35e-103 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10106g00005 - - gmx:547939 929.472