Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10093g00006 ATGGCTGGAGCGAGGGAACAAGATCAGTACATGCCAATAGCAAATGTGTTAAGGATCATGCGAAAGATCTTACCATCGCATGCAAAGATCTCCGATGAAGCGAAGGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGTTTCATCACTGCTGAAGCAAATGACCGATGTCAGCGCGAACAACGTAAGACTGTAACTGCTGAAGATGTTTTGTGGGCTATGGGAAAACTTGGTTTTGATGACTATGCTCAATCTCTTTCTATTTACCTTAATCGTTATCGCCAAAGTGAAGGAGACCGTATGTCTGTGAGACGTGCTCCTACTTCTGTTCCTCCAATGGAGATGATGAACCCACCTTATCAACCTTATCCTCCTCATGGTTTTGGAATGTTTGACTATGATCCATCACACTCCATAGCTTCTTCTTCAAGATCAGGTGGACTTGTTCCAAACATTGATCCTTATGTTAATCCAAAACCTAATGATGATTTTGATCCTTTTCTTAATCCAAAACCTGCTGATGATAATCATATGTGA 537 0.4153 MAGAREQDQYMPIANVLRIMRKILPSHAKISDEAKETIQECVSEYISFITAEANDRCQREQRKTVTAEDVLWAMGKLGFDDYAQSLSIYLNRYRQSEGDRMSVRRAPTSVPPMEMMNPPYQPYPPHGFGMFDYDPSHSIASSSRSGGLVPNIDPYVNPKPNDDFDPFLNPKPADDNHM 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10093g00006 178 FunFam Nuclear transcription factor Y subunit B-6 1 114 - -
Vium10093g00006 178 MobiDBLite consensus disorder prediction 139 178 - -
Vium10093g00006 178 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 101 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vium10093g00006 178 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Vium10093g00006 178 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Vium10093g00006 178 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Vium10093g00006 178 Gene3D Histone, subunit A 2 110 IPR009072 GO:0046982
Vium10093g00006 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Vium10093g00006 178 SUPERFAMILY Histone-fold 7 108 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10093g00006 Vium-Chr10093 74203 74965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10093g00006 4 132 CCAAT-HAP3 Transcription Factor Family AT1G21970 62.676 5.46e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium10093g00006 CBFD_NFYB_HMF 5.3e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10093g00006 K08065 - gmx:100811633 225.328