Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10088g00004 ATGAGTATTCCACAAGCTGCTGCTGCTGCTTCTTCTTCTGCTGCAACCAGCCCTCCTCCACATCTGTATCCACAGGAGCTACAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCTATACTCTTCTCCATCATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAGAGAAGGGCCTCTTCTCTCTCTTCCTCTTCTCATTTTCTTCCAAGGACCATTGCCAATCCACCAACCACCACTCCCTATCATTCATCACCCTGTCAATTGGATCTGACCCTCCAATTCCTTGATAAGCTTCCAAAAGTTTTATTTGATGAGGATTTGCAAGCAAGAGATTCCCTGTGTTGTGTTTGTCTGGGGGAGTTTGAGGTGAAGGAAGAGGTGGTGCAGATTCCTTATTGCAAGCACGTGTTCCACTTGGATTGCATACATCACTGGCTGAAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACTACCAAGTTCTTCAATCCATCACCGCTTATTAATATTATATCAGACCCAACCCAGCATGGTGCTATCTTTTCAGACTCTCCATTGCACACTCCACCATTCCCACCTCACTCACAACATCATCATCAACTTGGTGCTTCCTCAAATGCTGCTAATTTGCCAGGGGAATGA 663 0.4449 MSIPQAAAAASSSAATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSHFLPRTIANPPTTTPYHSSPCQLDLTLQFLDKLPKVLFDEDLQARDSLCCVCLGEFEVKEEVVQIPYCKHVFHLDCIHHWLKSNSTCPLCRCSIIPTTTKFFNPSPLINIISDPTQHGAIFSDSPLHTPPFPPHSQHHHQLGASSNAANLPGE 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10088g00004 220 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Vium10088g00004 220 CDD RING-H2_EL5-like 116 158 - -
Vium10088g00004 220 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 85 163 - -
Vium10088g00004 220 MobiDBLite consensus disorder prediction 205 220 - -
Vium10088g00004 220 SUPERFAMILY RING/U-box 94 166 - -
Vium10088g00004 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 163 IPR013083 -
Vium10088g00004 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 170 - -
Vium10088g00004 220 MobiDBLite consensus disorder prediction 199 220 - -
Vium10088g00004 220 Pfam Ring finger domain 116 158 IPR001841 -
Vium10088g00004 220 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10088g00004 Vium-Chr10088 24950 27104 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10088g00004 17 163 C3H Transcription Factor Family AT4G10150 39.474 6.98e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10088g00004 K19039 - gmx:100794298 316.62