Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10080g00018 ATGAGATGGTCACTCATTTCTTCTGGTTCACAGATCTTTGATGGGCATAATGGAAATGCTGCTGCTATTTTTACTAGGGAGAATTTGTTAAATCACGTGTTGAGTGCTCTTCCTCGTGGGCTTGGGCGAGATGAGTGGTTGCATGCTTTACCCAGGGCATTGGTTGCGGGTTTCGTTAAGACCGACAAGGAGTTTCAGAGCCGAGGAGAAACTTCTGGAACCACAGCCACGTTTGTAATAGTGGATAGGTGGACTGTTACTGTTGCATCTGTTGGAGATTCCCGTTGTGTACTAGATGCCCAGGGTGGTGCTATTTCCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGAGGGAACGTGTAACTGCTAGTGGAGGTGAAGTTGGGAGACTTAGCATAGTTGGTGGTGCAGAGATTGGTCCCCTTCGATGCTGGCCAGGGGGTCTATGCCTTTCTAGGTCAATTGGAGACATGGATGTTGGAGAGTTCATTGTTCCCATACCATATGTCAAACAAGTGAAGCTATCAAAGGCTGGTGGGAGGCTTATAATTGCTTCTGATGGCATATGGGATGCTCTATCATCAGAAATGGCTGCAAAATCTTGTCGAGGTTTGCCTGCGGAACTTGCAGCTATGCAGGTTGTCAAGGAAGCACTACGAACGAGAGGATTAAAGGATGATACAACTTGCATAGTAGTTGACATAATCCCACCTGATAATGAATTGCCACCAACACCTCCCCCCCAAAAGCGGAACAAGCTGAGAGATCTTCTTTCCTTCAGGAAGAGATCCCGTGGTTCTGCAAGTAAGCTATCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTTGAAGAAGGATCGGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACACGGGGCAATCAACATCTGGTATTTTTGTTTGTGCTGTTTGTCAAGTTGATCTTGCTCCAAGTGAGGGCATTTCTGTCCACGCCGGTTCAATTTTCTCCACCAGCTCCAAACCCTGGCAAGGTCCCTTTCTTTGTTCTGATTGCCGTGATAAGAAGGATGCCATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTCTCATAG 1119 0.4567 MRWSLISSGSQIFDGHNGNAAAIFTRENLLNHVLSALPRGLGRDEWLHALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCVLDAQGGAISSLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLIIASDGIWDALSSEMAAKSCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPDNELPPTPPPQKRNKLRDLLSFRKRSRGSASKLSKKLSAINIVEELFEEGSAMLAERLGNDDNLNTGQSTSGIFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCSDCRDKKDAMEGKRPSGVKVS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10080g00018 372 Pfam Protein phosphatase 2C 11 210 IPR001932 -
Vium10080g00018 372 ProSiteProfiles PPM-type phosphatase domain profile. 1 238 IPR001932 -
Vium10080g00018 372 FunFam probable protein phosphatase 2C 5 4 243 - -
Vium10080g00018 372 SUPERFAMILY PP2C-like 12 238 IPR036457 -
Vium10080g00018 372 PANTHER PROTEIN PHOSPHATASE 12 237 IPR015655 GO:0004722|GO:0006470
Vium10080g00018 372 SMART PP2C_4 2 236 IPR001932 -
Vium10080g00018 372 CDD PP2Cc 12 238 IPR001932 -
Vium10080g00018 372 Gene3D - 10 242 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10080g00018 Vium-Chr10080 25230 28021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10080g00018 12 371 PP2C-type Phosphatase Gene Family AT1G68410 81.717 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10080g00018 - - gmx:100779571 672.544