Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10080g00017 ATGGCCTCTGGTGAAGGGAGGCGGCGTCATCACGATCTTGTGCCTCTTGCCGCATTGCTCAAGAGAGAGATGAAGAGTGAGAAGATGGAAAAGCCTACTGTGAGGTTTGGACATGCAGCTCAGTCCAAGAAAGGGGAGGATTACTTTCTTATTAAGACAGATTGTCAGCGAGTGCCCGGGAACCCTTCATCATCCTTTTCTGTATTTGCGATCTTTGATGGGCATAATGGAAATGCTGCTGCTATTTTTACTAGGGAGAATTTGTTAAATCACGTGTTGAGTGCTCTTCCTCGTGGGCTTGGGCGAGATGAGTGGTTGCATGCTTTACCCAGGGCATTGGTTGCGGGTTTCGTTAAGACCGACAAGGAGTTTCAGAGCCGAGGAGAAACTTCTGGAACCACAGCCACGTTTGTAATAGTGGATAGGTGGACTGTTACTGTTGCATCTGTTGGAGATTCCCGTTGTGTACTAGATGCCCAGGGTGGTGCTATTTCCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGAGGGAACGTGTAACTGCTAGTGGAGGTGAAGTTGGGAGACTTAGCATAGTTGGTGGTGCAGAGATTGGTCCCCTTCGATGCTGGCCAGGGGGTCTATGCCTTTCTAGGTCAATTGGAGACATGGATGTTGGAGAGTTCATTGTTCCCATACCATATGTCAAACAAGTGAAGCTATCAAAGGCTGGTGGGAGGCTTATAATTGCATCTGATGGCATATGGGATGCTCTATCATCAGAAATGGCTGCAAAATCTTGTCGAGGTTTGCCTGCGGAACTTGCAGCTATGCAGGTTGTCAAGGAAGCACTACGAACGAGAGGATTAAAGGATGATACAACTTGCATAGTAGTTGACATAATCCCACCTGATAATGAATTGCCACCAACACCTCCCCCCCAAAAGCGGAACAAGCTGAGAGATCTTCTTTCCTTCAGGAAGAGATCCCGTGATTCTGCAAGTAAGCTATCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTTGAAGAAGGATCGGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACACGGGGCAATCAACATCTGGTATTTTTGTTTGTGCTGTTTGTCAAGTTGATCTTGCTCCAAGTGAGGGCATTTCTGTCCACGCCGGTTCAATTTTCTCCACCAGCTCCAAACCCTGGCAAGGTCCCTTTCTTTGTTCTGATTGCCGTGATAAGAAGGATGCCATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTCTCATAG 1296 0.463 MASGEGRRRHHDLVPLAALLKREMKSEKMEKPTVRFGHAAQSKKGEDYFLIKTDCQRVPGNPSSSFSVFAIFDGHNGNAAAIFTRENLLNHVLSALPRGLGRDEWLHALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCVLDAQGGAISSLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLIIASDGIWDALSSEMAAKSCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPDNELPPTPPPQKRNKLRDLLSFRKRSRDSASKLSKKLSAINIVEELFEEGSAMLAERLGNDDNLNTGQSTSGIFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCSDCRDKKDAMEGKRPSGVKVS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10080g00017 431 SUPERFAMILY PP2C-like 40 297 IPR036457 -
Vium10080g00017 431 CDD PP2Cc 36 297 IPR001932 -
Vium10080g00017 431 Pfam Protein phosphatase 2C 61 269 IPR001932 -
Vium10080g00017 431 Gene3D - 35 301 IPR036457 -
Vium10080g00017 431 SMART PP2C_4 27 295 IPR001932 -
Vium10080g00017 431 PANTHER PROTEIN PHOSPHATASE 36 296 IPR015655 GO:0004722|GO:0006470
Vium10080g00017 431 SMART PP2C_SIG_2 51 297 IPR001932 -
Vium10080g00017 431 FunFam probable protein phosphatase 2C 5 35 302 - -
Vium10080g00017 431 ProSiteProfiles PPM-type phosphatase domain profile. 28 297 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10080g00017 Vium-Chr10080 17909 22105 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10080g00017 1 430 PP2C-type Phosphatase Gene Family AT1G68410 79.358 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10080g00017 - - gmx:100779571 806.594