Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10080g00016 ATGCAGCTCAGTCCAAGAAAGGGGAGGATTACTTTCTTATTAAGACAGATTGTCAGCGAGTGCCCGGGAACCCTTCATCATCCTTTTCTGTATTTGCGGGAGAATTTGTTAAATCACGTGTTGAGTGCTCTTCCTCGTGGGCTTGGGCGAGATGAGTGGTTGCATGCTTTACCCAGGGCATTGGTTGCGGGTTTCGTTAAGACCGACAAGGAGTTTCAGAGCCGAGGAGAAACTTCTGGAACCACAGCCACGTTTGTAATAGTGGATAGGTGGACTGTTACTGTTGCATCTGTTGGAGATTCCCGTTGTGTACTAGATGCCCAGGGTGGTGCTATTTCCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGAGGGAACGTGTAACTGCTAGTGGAGGTGAAGTTGGGAGACTTAGCATAGTTGGTGGTGCAGAGATTGGTCCCCTTCGATGCTGGCCAGGGGGTCTATGCCTTTCTAGGTCAATTGGAGACATGGATGTTGGAGAGTTCATTGTTCCCATACCATATGTCAAACAAGTGAAGCTATCAAAGGCTGGTGGGAGGCTTATAATTGCATCTGATGGCATATGGGATGCTCTATCATCAGAAATGGCTGCAAAATCTTGTCGAGGTTTGCCTGCGGAACTTGCAGCTATGCAGGTTGTCAAGGAAGCACTACGAACGAGAGGATTAAAGGATGATACAACTTGCATAGTAGTTGACATAATCCCACCTGATAATGAATTGCCACCAACACCTCCCCCCCAAAAGCGGAACAAGCTGAGAGATCTTCTTTCCTTCAGGAAGAGATCCCGTGATTCTGCAAGTAAGCTATCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTTGAAGAAGGATCGGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACACGGGGCAATCAACATCTGGTATTTTTGTTTGTGCTGTTTGTCAAGTTGATCTTGCTCCAAGTGAGGGCATTTCTGTCCACGCCGGTTCAATTTTCTCCACCAGCTCCAAACCCTGGCAAGGTCCCTTTCTTTGTTCTGATTGCCGTGATAAGAAGGATGCCATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTCTCATAG 1140 0.4605 MQLSPRKGRITFLLRQIVSECPGTLHHPFLYLRENLLNHVLSALPRGLGRDEWLHALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCVLDAQGGAISSLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLIIASDGIWDALSSEMAAKSCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPDNELPPTPPPQKRNKLRDLLSFRKRSRDSASKLSKKLSAINIVEELFEEGSAMLAERLGNDDNLNTGQSTSGIFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCSDCRDKKDAMEGKRPSGVKVS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10080g00016 379 SMART PP2C_4 1 243 IPR001932 -
Vium10080g00016 379 CDD PP2Cc 31 245 IPR001932 -
Vium10080g00016 379 Pfam Protein phosphatase 2C 56 217 IPR001932 -
Vium10080g00016 379 Gene3D - 26 249 IPR036457 -
Vium10080g00016 379 FunFam probable protein phosphatase 2C 5 24 250 - -
Vium10080g00016 379 ProSiteProfiles PPM-type phosphatase domain profile. 1 245 IPR001932 -
Vium10080g00016 379 SUPERFAMILY PP2C-like 31 245 IPR036457 -
Vium10080g00016 379 PANTHER PROTEIN PHOSPHATASE 31 244 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10080g00016 Vium-Chr10080 17907 22105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10080g00016 30 378 PP2C-type Phosphatase Gene Family AT1G68410 81.714 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10080g00016 - - gmx:100779571 646.736