Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10080g00006 ATGGCCTCTGGTGAAGGGAGGCGGCGTCATCACGATCTTGTGCCTCTTGCCGCATTGCTCAAGAGAGAGATGAAGAGTGAGAAGATGGAAAAGCCTACTGTGAGGTTTGGACATGCAGCTCAGTCCAAGAAAGGGGAGGATTACTTTCTTATTAAGACAGATTGTCAGCGAGTGCCCGGGAACCCTTCATCATCCTTTTCTGTATTTGCGATCTTTGATGGGCATAATGGAAATGCTGCTGCTATTTTTACTAGGGAGAATTTGTTAAATCACGTGTTGAGTGCTCTTCCTCGTGGGCTTGGGCGAGATGAGTGGTTGCATGCTTTACCCAGGGCATTGGTTGCGGGTTTCGTTAAGACCGACAAGGAGTTTCAGAGCCGAGGAGAAACTTCTGGAACCACAGCCACGTTTGTAATAGTGGATAGGTGGACTGTTACTGTTGCATCTGTTGGAGATTCCCGTTGTGTACTAGATGCCCAGGGTGGTGCTATTTCCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGTATGTTTTTATCCCTTAA 555 0.4667 MASGEGRRRHHDLVPLAALLKREMKSEKMEKPTVRFGHAAQSKKGEDYFLIKTDCQRVPGNPSSSFSVFAIFDGHNGNAAAIFTRENLLNHVLSALPRGLGRDEWLHALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCVLDAQGGAISSLTVDHRLEENIEEYVFIP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10080g00006 184 SUPERFAMILY PP2C-like 39 178 IPR036457 -
Vium10080g00006 184 ProSiteProfiles PPM-type phosphatase domain profile. 28 184 IPR001932 -
Vium10080g00006 184 PANTHER PROTEIN PHOSPHATASE 2C 35 179 IPR015655 GO:0004722|GO:0006470
Vium10080g00006 184 CDD PP2Cc 36 180 IPR001932 -
Vium10080g00006 184 Gene3D - 34 180 IPR036457 -
Vium10080g00006 184 SMART PP2C_4 27 183 IPR001932 -
Vium10080g00006 184 Pfam Protein phosphatase 2C 61 176 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10080g00006 Vium-Chr10080 13208 15219 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10080g00006 1 179 PP2C-type Phosphatase Gene Family AT1G68410 77.174 3.68e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10080g00006 - - vum:124849192 370.933